View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_2 (Length: 496)
Name: NF12170_high_2
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 3 - 489
Target Start/End: Original strand, 38053205 - 38053691
Alignment:
| Q |
3 |
ctcggatctttacggccatccagtccactaagatttggctggacggctacagataatctgagctctgaagtgcataccaatttgttttctttccaccatt |
102 |
Q |
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| T |
38053205 |
ctcggatctttacggccatccagtccactaagatttggctggacggctacagataatctgagctctgaagtgcataccaatttgttttctttccaccatt |
38053304 |
T |
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| Q |
103 |
taattagatagaaaataaaggtctaaataagtaggggaccgtctcctgatatgtatgtaactcgcttgaggtttagcatgttcgtattatctcggatcct |
202 |
Q |
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| T |
38053305 |
taattagatagaaaataaaggtctaaataagtaggggaccgtctcctgatatgtatgtaactcgcttgaggtttagcatgttcgtattatctcggatcct |
38053404 |
T |
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| Q |
203 |
ctgcggtcatctagtccagtaagatacggttggactgccgcaaatgatccaagctcaaggctgcatgtcgattttcttactttccactatttaaatagat |
302 |
Q |
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| T |
38053405 |
ctgcggtcatctagtccagtaagatacggttggactgccgcaaatgatccaagctcaaggctgcatgtcgattttcttactttccactatttaaatagat |
38053504 |
T |
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| Q |
303 |
agaaaataatgatttaaataagtagggtctgtctcctgatacgtaacacacgctgctaccttccgcttatacaaattaatatcaagtttctttttctctt |
402 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38053505 |
agaaaataatgatataaataagtagggtctgtctccttatacgtaacacacgctgctaccttccgcttatacaaattaatatcaagtttctttttctctt |
38053604 |
T |
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| Q |
403 |
gatttcatgtttgtgtcacaatgaatgattcaactctatttacatcgatctctgactgtcatgacaaagaatattaccctcattgct |
489 |
Q |
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| T |
38053605 |
gatttcatgtttgtgtcacaatgaatgattcaactctatttacatcgatctctgactgtcatgacaaagaatattaccctcattgct |
38053691 |
T |
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