View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12170_high_3 (Length: 496)

Name: NF12170_high_3
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12170_high_3
NF12170_high_3
[»] chr4 (21 HSPs)
chr4 (30-468)||(1746981-1747419)
chr4 (157-242)||(35723373-35723457)
chr4 (192-236)||(40613443-40613487)
chr4 (281-468)||(6005819-6006005)
chr4 (192-231)||(8423740-8423779)
chr4 (192-250)||(20743300-20743358)
chr4 (192-242)||(36635311-36635361)
chr4 (151-211)||(44132627-44132685)
chr4 (192-236)||(7012059-7012103)
chr4 (158-236)||(22234880-22234957)
chr4 (192-236)||(23293008-23293052)
chr4 (159-230)||(38148716-38148785)
chr4 (192-242)||(903909-903959)
chr4 (192-230)||(22440622-22440660)
chr4 (194-231)||(23861455-23861492)
chr4 (187-228)||(30522932-30522973)
chr4 (192-228)||(16189710-16189746)
chr4 (206-242)||(17345451-17345487)
chr4 (194-242)||(20521873-20521921)
chr4 (192-236)||(24343500-24343544)
chr4 (194-226)||(34200295-34200327)
[»] chr7 (30 HSPs)
chr7 (159-242)||(32308107-32308188)
chr7 (158-236)||(19206043-19206119)
chr7 (151-242)||(6630895-6630984)
chr7 (192-236)||(29787391-29787435)
chr7 (158-235)||(30731031-30731104)
chr7 (193-242)||(11722121-11722170)
chr7 (165-232)||(5548673-5548738)
chr7 (168-242)||(20549778-20549850)
chr7 (172-242)||(22868029-22868097)
chr7 (192-234)||(23191891-23191933)
chr7 (192-242)||(26733291-26733341)
chr7 (192-242)||(27945028-27945078)
chr7 (165-241)||(22602707-22602781)
chr7 (152-236)||(24339635-24339717)
chr7 (195-236)||(28155563-28155604)
chr7 (192-236)||(24289813-24289857)
chr7 (192-236)||(25481895-25481939)
chr7 (196-242)||(10042924-10042970)
chr7 (165-242)||(21828402-21828477)
chr7 (192-242)||(22484012-22484062)
chr7 (192-230)||(32287485-32287523)
chr7 (197-242)||(25791640-25791685)
chr7 (158-242)||(26329372-26329454)
chr7 (153-221)||(35297657-35297723)
chr7 (194-243)||(35861950-35861999)
chr7 (200-236)||(1433447-1433483)
chr7 (192-224)||(2424619-2424651)
chr7 (196-236)||(2425759-2425799)
chr7 (196-236)||(5307253-5307293)
chr7 (153-236)||(23128646-23128727)
[»] chr6 (35 HSPs)
chr6 (152-244)||(10339109-10339200)
chr6 (168-245)||(19040336-19040411)
chr6 (152-245)||(26562673-26562764)
chr6 (168-242)||(7265593-7265665)
chr6 (165-242)||(9027165-9027240)
chr6 (192-242)||(9658866-9658916)
chr6 (151-242)||(16766684-16766773)
chr6 (158-236)||(5000616-5000692)
chr6 (193-247)||(7801179-7801233)
chr6 (194-236)||(9629376-9629418)
chr6 (198-236)||(20371138-20371176)
chr6 (165-229)||(9025491-9025553)
chr6 (192-241)||(17341686-17341735)
chr6 (151-242)||(9107353-9107442)
chr6 (196-236)||(10842525-10842565)
chr6 (199-242)||(5732539-5732582)
chr6 (158-236)||(8931592-8931668)
chr6 (194-236)||(7377972-7378014)
chr6 (192-242)||(7996400-7996450)
chr6 (192-242)||(8022351-8022401)
chr6 (192-242)||(12696311-12696361)
chr6 (192-242)||(13851723-13851773)
chr6 (196-242)||(17841615-17841661)
chr6 (192-242)||(19044451-19044501)
chr6 (194-228)||(30866168-30866202)
chr6 (193-234)||(6665208-6665249)
chr6 (152-232)||(10294104-10294182)
chr6 (192-245)||(13360394-13360447)
chr6 (192-245)||(31959143-31959196)
chr6 (192-229)||(32511688-32511725)
chr6 (158-242)||(34073337-34073419)
chr6 (192-236)||(7977852-7977896)
chr6 (192-228)||(31579247-31579283)
chr6 (196-236)||(33001315-33001355)
chr6 (192-236)||(34595127-34595171)
[»] chr8 (22 HSPs)
chr8 (158-236)||(24362192-24362268)
chr8 (158-234)||(11927076-11927150)
chr8 (192-236)||(34897078-34897122)
chr8 (196-236)||(39954305-39954345)
chr8 (152-242)||(15816113-15816201)
chr8 (168-242)||(31109518-31109590)
chr8 (194-236)||(31236601-31236643)
chr8 (168-236)||(13844596-13844662)
chr8 (192-229)||(18067956-18067993)
chr8 (194-242)||(13436988-13437036)
chr8 (194-242)||(22651963-22652011)
chr8 (196-236)||(27101508-27101548)
chr8 (192-260)||(30271313-30271381)
chr8 (192-231)||(4611532-4611571)
chr8 (168-242)||(4786338-4786410)
chr8 (158-236)||(11944658-11944734)
chr8 (192-234)||(7658458-7658500)
chr8 (194-236)||(27213540-27213582)
chr8 (192-242)||(29510326-29510376)
chr8 (168-223)||(3025557-3025610)
chr8 (158-229)||(25566841-25566910)
chr8 (194-242)||(36934657-36934705)
[»] chr1 (45 HSPs)
chr1 (152-234)||(25361881-25361961)
chr1 (192-242)||(2896143-2896193)
chr1 (192-242)||(36878448-36878498)
chr1 (157-229)||(34371714-34371783)
chr1 (165-236)||(9828037-9828106)
chr1 (192-236)||(10474999-10475043)
chr1 (158-244)||(10572579-10572663)
chr1 (192-242)||(398787-398837)
chr1 (192-242)||(17831553-17831603)
chr1 (194-242)||(6427337-6427385)
chr1 (165-236)||(7918208-7918277)
chr1 (192-236)||(12443482-12443526)
chr1 (194-245)||(1262868-1262919)
chr1 (192-242)||(5376522-5376572)
chr1 (188-242)||(6415019-6415073)
chr1 (159-236)||(17754304-17754379)
chr1 (152-225)||(44482234-44482305)
chr1 (194-243)||(609482-609531)
chr1 (192-245)||(19562643-19562696)
chr1 (192-236)||(113292-113336)
chr1 (192-228)||(10233254-10233290)
chr1 (192-232)||(25098577-25098617)
chr1 (192-236)||(34298429-34298473)
chr1 (195-242)||(9709807-9709854)
chr1 (192-231)||(26238134-26238173)
chr1 (192-243)||(27471588-27471639)
chr1 (194-245)||(38078685-38078736)
chr1 (168-234)||(39953146-39953210)
chr1 (192-234)||(5898288-5898330)
chr1 (188-242)||(9103627-9103681)
chr1 (192-230)||(20157372-20157410)
chr1 (192-242)||(38503307-38503357)
chr1 (192-242)||(40285676-40285726)
chr1 (196-234)||(41877496-41877534)
chr1 (201-242)||(9690303-9690344)
chr1 (168-236)||(29163381-29163447)
chr1 (192-233)||(31015039-31015080)
chr1 (193-242)||(36905984-36906033)
chr1 (192-229)||(40181871-40181908)
chr1 (192-236)||(1486731-1486775)
chr1 (192-236)||(13436451-13436495)
chr1 (192-228)||(19909298-19909334)
chr1 (192-236)||(21378571-21378615)
chr1 (196-236)||(21530682-21530722)
chr1 (165-236)||(34712380-34712449)
[»] chr5 (30 HSPs)
chr5 (151-251)||(3966481-3966579)
chr5 (194-260)||(30098295-30098361)
chr5 (194-270)||(19737506-19737582)
chr5 (192-236)||(28588696-28588740)
chr5 (192-235)||(27932229-27932272)
chr5 (152-242)||(39698528-39698616)
chr5 (196-242)||(27144450-27144496)
chr5 (197-242)||(17123035-17123080)
chr5 (194-242)||(31084310-31084358)
chr5 (195-242)||(2436909-2436956)
chr5 (124-242)||(6035470-6035585)
chr5 (192-242)||(6247609-6247659)
chr5 (192-242)||(6326319-6326369)
chr5 (196-242)||(14674256-14674302)
chr5 (196-234)||(19579696-19579734)
chr5 (192-242)||(21191078-21191128)
chr5 (192-229)||(6471911-6471948)
chr5 (194-235)||(9449463-9449504)
chr5 (192-245)||(21576767-21576820)
chr5 (195-232)||(26716141-26716178)
chr5 (195-232)||(26985881-26985918)
chr5 (168-228)||(30502388-30502446)
chr5 (168-228)||(30542731-30542789)
chr5 (155-231)||(32766930-32767004)
chr5 (164-228)||(36838544-36838606)
chr5 (192-244)||(4344727-4344779)
chr5 (167-242)||(11685926-11685999)
chr5 (192-236)||(34879343-34879387)
chr5 (196-236)||(35017030-35017070)
chr5 (204-236)||(38816729-38816761)
[»] chr2 (23 HSPs)
chr2 (192-236)||(21616755-21616799)
chr2 (192-243)||(21782840-21782891)
chr2 (159-229)||(44860320-44860388)
chr2 (197-242)||(31284035-31284080)
chr2 (192-232)||(37411266-37411306)
chr2 (152-230)||(18889575-18889651)
chr2 (192-242)||(23718013-23718063)
chr2 (192-242)||(24105685-24105735)
chr2 (192-234)||(28677904-28677946)
chr2 (192-260)||(24894357-24894426)
chr2 (170-242)||(31808064-31808134)
chr2 (192-232)||(18276518-18276558)
chr2 (192-234)||(10535781-10535823)
chr2 (194-236)||(18420458-18420500)
chr2 (192-242)||(21374721-21374771)
chr2 (192-242)||(30404872-30404922)
chr2 (158-232)||(36409619-36409689)
chr2 (194-242)||(896198-896246)
chr2 (192-236)||(19573971-19574015)
chr2 (187-243)||(35447904-35447960)
chr2 (151-242)||(36756327-36756416)
chr2 (194-242)||(37558964-37559012)
chr2 (192-236)||(42832298-42832342)
[»] scaffold0004 (1 HSPs)
scaffold0004 (192-242)||(92794-92844)
[»] chr3 (38 HSPs)
chr3 (192-244)||(4987313-4987365)
chr3 (157-236)||(8039824-8039901)
chr3 (192-236)||(8383250-8383294)
chr3 (167-242)||(26290358-26290431)
chr3 (188-263)||(8412963-8413038)
chr3 (194-236)||(5407271-5407313)
chr3 (192-241)||(10690284-10690333)
chr3 (192-245)||(10954936-10954989)
chr3 (168-236)||(49505154-49505220)
chr3 (194-242)||(5441055-5441103)
chr3 (168-231)||(7928448-7928509)
chr3 (192-236)||(12704000-12704044)
chr3 (192-236)||(34307802-34307846)
chr3 (194-242)||(40052319-40052367)
chr3 (187-242)||(2620070-2620125)
chr3 (195-242)||(9800027-9800074)
chr3 (165-231)||(11313797-11313861)
chr3 (192-235)||(14979175-14979218)
chr3 (152-236)||(25064902-25064982)
chr3 (192-242)||(1438791-1438841)
chr3 (192-242)||(21479105-21479155)
chr3 (192-242)||(21720751-21720801)
chr3 (152-236)||(14209106-14209188)
chr3 (195-232)||(24633763-24633800)
chr3 (158-242)||(28678290-28678372)
chr3 (192-245)||(32429402-32429455)
chr3 (192-236)||(4990989-4991033)
chr3 (192-236)||(11493383-11493427)
chr3 (192-236)||(11610514-11610558)
chr3 (163-242)||(11665931-11666008)
chr3 (194-242)||(14829677-14829724)
chr3 (192-236)||(16192772-16192816)
chr3 (192-236)||(23870581-23870625)
chr3 (196-236)||(25074782-25074822)
chr3 (192-236)||(26508103-26508147)
chr3 (192-236)||(28917994-28918038)
chr3 (196-232)||(32804566-32804602)
chr3 (192-236)||(34910310-34910354)
[»] scaffold0036 (1 HSPs)
scaffold0036 (158-232)||(9737-9809)
[»] scaffold1528 (1 HSPs)
scaffold1528 (159-236)||(1028-1103)
[»] scaffold0306 (1 HSPs)
scaffold0306 (192-242)||(13387-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (192-242)||(21890-21940)
[»] scaffold0103 (1 HSPs)
scaffold0103 (192-242)||(51798-51848)
[»] scaffold0223 (1 HSPs)
scaffold0223 (160-236)||(20165-20239)
[»] scaffold0044 (1 HSPs)
scaffold0044 (192-236)||(53173-53217)
[»] scaffold0020 (1 HSPs)
scaffold0020 (165-236)||(135309-135378)
[»] scaffold0123 (1 HSPs)
scaffold0123 (159-229)||(44516-44584)
[»] scaffold0110 (1 HSPs)
scaffold0110 (194-245)||(28834-28885)
[»] scaffold0018 (1 HSPs)
scaffold0018 (195-242)||(192274-192321)
[»] scaffold0008 (1 HSPs)
scaffold0008 (158-228)||(263362-263430)
[»] scaffold0003 (1 HSPs)
scaffold0003 (152-242)||(241581-241669)
[»] scaffold0085 (1 HSPs)
scaffold0085 (194-236)||(26386-26428)
[»] scaffold0136 (1 HSPs)
scaffold0136 (152-232)||(3833-3911)
[»] scaffold0024 (1 HSPs)
scaffold0024 (151-227)||(68225-68299)
[»] scaffold0697 (1 HSPs)
scaffold0697 (196-236)||(1637-1677)
[»] scaffold0361 (1 HSPs)
scaffold0361 (192-236)||(14523-14567)
[»] scaffold0066 (1 HSPs)
scaffold0066 (192-236)||(33385-33429)
[»] scaffold0049 (1 HSPs)
scaffold0049 (192-228)||(63774-63810)
[»] scaffold0027 (1 HSPs)
scaffold0027 (192-236)||(46675-46719)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Complemental strand, 1747419 - 1746981
Alignment:
Q  30 acttgttccaactttgaccactctctccataaaaacgacctagttgttagctacgactacgatgacttcccttccttgaagaggttgacctgcaacactc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  1747419 acttgttccaactttgaccactctctccataaaaacgacctagttgttagccacgactacaatgacttccctcccttgaagaggttgacctacaacactc 1747320  T
Q  130 cttagattaagcgtgtccccatgtgttcgacaccaacacgacactgacacataaaatg--------ttaaactgaattatgtgattttctcaatttatta 221  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||    
T  1747319 cttagattaggcgtgtccccatgtgttcgacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaatttatta 1747220  T
Q  222 gcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtatttgattatta 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||        |||||||||||||    
T  1747219 gcggtgtcggcgtgtaagtgctcggtgtccttgcttcattgattgaaactagtttttttctttgaaaatgccaacttag--------tatttgattatta 1747128  T
Q  322 ctctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagttataaatta 421  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1747127 ctctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagttataaatta 1747028  T
Q  422 cattgtttttctttgctttcccttgaattgtatcatctggatttgat 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1747027 cattgtttttctttgctttcccttgaattgtatcatctggatttgat 1746981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 35723373 - 35723457
Alignment:
Q  157 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtg-attttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||| | |||||||||||||||| |||  || | ||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  35723373 cgacaccgatacgacactgacacatataat--tacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgt 35723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 40613487 - 40613443
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  40613487 actgaattatgtgattttctcaaaatattagcggtgtcggcgtgt 40613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 468
Target Start/End: Complemental strand, 6006005 - 6005819
Alignment:
Q  281 ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa 380  Q
    ||||||||||| ||||||||||||  ||||| || || | || || |||| ||||||| || | ||||  |||||| ||| || |||||||||||  |||    
T  6006005 ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa 6005906  T
Q  381 tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat 468  Q
    | ||||  ||  ||||  ||||||||||  ||| ||||||| || ||||| |||  |||||||||||||| ||||||||||| |||||    
T  6005905 tgtaatataacaagttgggtgttatacatcgttttaaattatatagtttt-cttcactttcccttgaattatatcatctggacttgat 6005819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 8423740 - 8423779
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  8423740 actgaattatgtgattttctcaaattattagcggtgtcgg 8423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 20743300 - 20743358
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtc 250  Q
    |||||||||||| |||||||||| |||||| | |||||||||||| |||||||| ||||    
T  20743300 actgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgttcgatgtc 20743358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 36635361 - 36635311
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  36635361 actgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgt 36635311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 44132627 - 44132685
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttct 211  Q
    ||||||||||||||||||||||| |||||||| ||  ||| ||||||||| ||||||||||    
T  44132627 tgtgttcgacaccaacacgacaccgacacatataa--ttatactgaattacgtgattttct 44132685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 7012103 - 7012059
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  7012103 actgaattatgtcattttctcaaattattatcggtgtcggcgtgt 7012059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 22234880 - 22234957
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttct-caatttattagcggtgtcggcgtgt 236  Q
    |||||| ||||||||| |||||||| |||  || |||||||||||||||||| | ||| || ||||||||||||||||||    
T  22234880 gacaccgacacgacaccgacacatagaat--tacactgaattatgtgatttttttcaaatttttagcggtgtcggcgtgt 22234957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 23293008 - 23293052
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  23293008 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 23293052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 38148716 - 38148785
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 230  Q
    ||||||||||||||  ||||  ||||||  || |||||||||||||||||||||||  ||||||||||||||    
T  38148716 acaccaacacgacatcgacatttaaaat--tacactgaattatgtgattttctcaaactattagcggtgtcg 38148785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 903959 - 903909
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| |||||| ||||| ||| |||| |||||    
T  903959 actgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgt 903909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 22440622 - 22440660
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcg 230  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  22440622 actgaattatgtgattttctcaaattattaacggtgtcg 22440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 23861455 - 23861492
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  23861455 tgaatcatgtgattttatcaatttattagcggtgtcgg 23861492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 30522932 - 30522973
Alignment:
Q  187 gttaaactgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  30522932 gttacactgaattatgtgattttctcaaataattagcggtgt 30522973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 16189746 - 16189710
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgt 228  Q
    ||||||||||||||||||||||| || ||||||||||    
T  16189746 actgaattatgtgattttctcaaatttttagcggtgt 16189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 17345451 - 17345487
Alignment:
Q  206 ttttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagtgt 17345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 20521873 - 20521921
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||| |||| ||||||||| |||||    
T  20521873 tgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgt 20521921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24343544 - 24343500
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||    
T  24343544 actgaattatgtaattttctcaaattattatccgtgtcggcgtgt 24343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 34200295 - 34200327
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggt 226  Q
    ||||||||||||||||||||| |||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagcggt 34200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 32308188 - 32308107
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  32308188 acaccgacacgacactgacacatacaat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 19206119 - 19206043
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||| ||||| |||||||| |||  |||  ||||||||||||||||||||| |||||||||||||||||||||    
T  19206119 gacaccaacaagacaccgacacatataattataa--tgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 6630895 - 6630984
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||| ||||||||||||||||  |||||||| |||  || ||||||||| |||| |||||||| ||||||| ||||||||||||| |||||    
T  6630895 tgtgtccgacaccaacacgacatcgacacatataat--tacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgt 6630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 29787391 - 29787435
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  29787391 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 30731104 - 30731031
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtg 235  Q
    |||||||||||||||| |||||| ||    ||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaa----ttacactgaattatgtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 11722121 - 11722170
Alignment:
Q  193 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgt 11722170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 5548738 - 5548673
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||||||||||| |||  || |||||||||| |||||||||||| |||| ||||||||||||    
T  5548738 acacgacactgacacatataat--tacactgaattatttgattttctcaaattatcagcggtgtcggc 5548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 20549850 - 20549778
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||||| |||| |||||    
T  20549850 cgacaccgacacatataat--tacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 22868097 - 22868029
Alignment:
Q  172 actgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||| |||  || ||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  22868097 actgacacatataat--tacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgt 22868029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 23191933 - 23191891
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  23191933 actgaaatatgtgattttctcaaattattagcggtgtcggcgt 23191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 26733341 - 26733291
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  26733341 actgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgt 26733291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 27945078 - 27945028
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||| |||||    
T  27945078 actgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgt 27945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 22602707 - 22602781
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 241  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| | |||  |||||||||||||| ||||    
T  22602707 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtg 22602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 24339717 - 24339635
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||||||||    
T  24339717 gtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 24339635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 28155604 - 28155563
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  28155604 gaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24289857 - 24289813
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||    
T  24289857 actgaattatgtaattttctcaaattattggcggtgtcggcgtgt 24289813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 25481939 - 25481895
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  25481939 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 25481895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 10042970 - 10042924
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  10042970 aattatgtgaatttatcaaattattagtggtgtcggcgtgtaagtgt 10042924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 21828402 - 21828477
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||||||||||||| |||  || | || |||||||||||||||||| ||| || |||||||||||||| |||||    
T  21828402 acacaacactgacacatacaat--tacaatggattatgtgattttctcaaattactaacggtgtcggcgtgtcagtgt 21828477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 22484062 - 22484012
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||  ||||||| || ||||||||||||||||||||| |||||    
T  22484062 actgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagtgt 22484012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 32287485 - 32287523
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcg 230  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  32287485 actgaattatgtgattttctcagattattagcggtgtcg 32287523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 25791685 - 25791640
Alignment:
Q  197 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| |||||||| | ||||||||||||||||||| |||||    
T  25791685 attatgtgaatttctcaaataattagcggtgtcggcgtgtcagtgt 25791640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 26329372 - 26329454
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| ||||||| | |||||||| |||  || |||||||| |||| ||||||||| |||||| || ||||||||||| |||||    
T  26329372 gacaccgacacgacgccgacacatataat--tacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgt 26329454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 35297657 - 35297723
Alignment:
Q  153 tgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttatta 221  Q
    ||||||||| |||||||||||  ||||||| |||  |||  ||||||||||||||||||||| ||||||    
T  35297657 tgttcgacatcaacacgacaccaacacatataattataa--tgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 35861999 - 35861950
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 243  Q
    |||||||||||||||| |||| |||||||  |||||||||||| ||||||    
T  35861999 tgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgtt 35861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 1433483 - 1433447
Alignment:
Q  200 atgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  1433483 atgtgattttctcaaattattaacggtgtcggcgtgt 1433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 2424651 - 2424619
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcg 224  Q
    ||||||||||||||||||||||| |||||||||    
T  2424651 actgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 2425759 - 2425799
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  2425759 aattatgtgattttctcaaattattaacggtgccggcgtgt 2425799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 5307293 - 5307253
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||| |||| || |||||||||||||    
T  5307293 aattatgtgattttctcaaattataagtggtgtcggcgtgt 5307253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 23128646 - 23128727
Alignment:
Q  153 tgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||| |||| ||||||||  |  ||| |||||||||| || ||||||||| ||||||  |||||| ||||||    
T  23128646 tgttcgacaccaacacaacaccgacacatatga--ttacactgaattatatggttttctcaaattattattggtgtcagcgtgt 23128727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 10339109 - 10339200
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 244  Q
    |||| ||||||| ||||| |||||||||||| ||| | | ||||||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  10339109 gtgtccgacaccgacacggcactgacacatataat-taacactgaattatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgttc 10339200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 19040411 - 19040336
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  19040411 cgacacagacacatataat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtattcg 19040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 26562764 - 26562673
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||||||||| ||||||||  |||||||| |||  || ||||||||||||||||||||||| || ||||| ||||||||||||  |||||||    
T  26562764 gtgttcgacaccgacacgacatcgacacatataat--tacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcg 26562673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 7265593 - 7265665
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  7265593 cgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 9027240 - 9027165
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| |||||||| |||  || || ||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  9027240 acacgacaccgacacatataat--tacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgt 9027165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 9658916 - 9658866
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  9658916 actgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgt 9658866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 16766773 - 16766684
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  16766773 tgtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 16766684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 5000616 - 5000692
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| ||| |||||||||| |||||||  || ||||||| ||||||||||||| | ||||||||||||||| |||||    
T  5000616 gacaccgacatgacactgacatataaaat--tatactgaatcatgtgattttctcgaattattagcggtgtcgacgtgt 5000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 7801179 - 7801233
Alignment:
Q  193 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggt 247  Q
    ||||||||||||||||| |||| |||||||  |||||||||||| ||||||||||    
T  7801179 ctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggt 7801233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 9629418 - 9629376
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  9629418 tgaattatgtgattttctcaaattattggcggtgtcggcgtgt 9629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 20371138 - 20371176
Alignment:
Q  198 ttatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20371138 ttatgtgattttctcaaattattagcggtgtcggcgtgt 20371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 9025491 - 9025553
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||||||| |||||    
T  9025491 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 17341686 - 17341735
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 241  Q
    |||||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  17341686 actgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtg 17341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 9107353 - 9107442
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||| ||||||| ||||||||| ||||| |  |||  || |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  9107353 tgtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgt 9107442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 10842565 - 10842525
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  10842565 aattatgtgattttttcaaattattagcggtgtcggcgtgt 10842525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 5732539 - 5732582
Alignment:
Q  199 tatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  5732539 tatgtgattttctcaaattattaacggtgtcggcgtgtcagtgt 5732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 8931592 - 8931668
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| ||||||||  |||||||| |||  || |||||||||||| |||||||||| || ||||| ||||||||||||    
T  8931592 gacaccgacacgacatcgacacatataat--tatactgaattatgttattttctcaaatttttagctgtgtcggcgtgt 8931668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 7378014 - 7377972
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  7378014 tgaattatgtgattttctcaaatttttagcggtgtcggggtgt 7377972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 7996400 - 7996450
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||| |||||||||||| |||||||| |||||||| ||| |||||    
T  7996400 actgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgt 7996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 8022401 - 8022351
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||| |||||||||||| |||||||| |||||||| ||| |||||    
T  8022401 actgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgt 8022351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 12696361 - 12696311
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| ||||| |||| |||||||| |||||||||||| |||||    
T  12696361 actgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgt 12696311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 13851773 - 13851723
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| || |||||||||| ||||||||||||||| ||||| |||||    
T  13851773 actgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgt 13851723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 17841615 - 17841661
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||||    
T  17841615 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 17841661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 19044501 - 19044451
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||| |||||    
T  19044501 actgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgt 19044451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 30866168 - 30866202
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgt 228  Q
    ||||||||||||||||||||| |||||||||||||    
T  30866168 tgaattatgtgattttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 6665249 - 6665208
Alignment:
Q  193 ctgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  6665249 ctgaattatgtgatttactcaaattattagcggtttcggcgt 6665208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 10294182 - 10294104
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||| ||||||||||||||||| |||||||| ||  ||| | |||| |||| |||| |||||| ||||||||||| |||||    
T  10294182 gtgtccgacaccaacacgacaccgacacatataa--ttacattgaaatatgcgattatctcaaattattagcggtatcggc 10294104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 13360394 - 13360447
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||  |||||||    
T  13360394 actgaattatgtgattttctcaaattactagtggtgtcgacgtgtctgtgttcg 13360447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 31959196 - 31959143
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||| ||||||||||||| |||| |||||||| ||| |||||||| ||||||||    
T  31959196 actgcattatgtgattttttcaaattattagctgtgacggcgtgtcagtgttcg 31959143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 32511688 - 32511725
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtc 229  Q
    |||||||||||||||||||| || ||||||||||||||    
T  32511688 actgaattatgtgattttcttaaattattagcggtgtc 32511725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 34073337 - 34073419
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| ||||||||| ||| |||| |||  || ||||||||||| ||||||||||| ||||||||| ||| ||| ||| |||||    
T  34073337 gacaccgacacgacaccgacccatataat--tacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgt 34073419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 7977852 - 7977896
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||    
T  7977852 actgaattatgtaattttttcaaattattagctgtgtcggcgtgt 7977896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 31579247 - 31579283
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgt 228  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  31579247 actgaattatgtgattttctcaaattattaacggtgt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 33001315 - 33001355
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||| |||| |||||||| ||||||||||||    
T  33001315 aattatgtgattttttcaaattattagcagtgtcggcgtgt 33001355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34595171 - 34595127
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  34595171 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 34595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 24362192 - 24362268
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||| ||||||||| |||  || |||||||||||||||| |||||| |||||||||||||||||||||    
T  24362192 gacaccgacacgacattgacacatataat--tacactgaattatgtgattctctcaaattattagcggtgtcggcgtgt 24362268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 11927076 - 11927150
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||||||| |||||||| |||  || |||||||||||||||||| |||| |||||| | ||||||||||    
T  11927076 gacaccaacacgacaccgacacatataat--tacactgaattatgtgattttatcaaattattaacagtgtcggcgt 11927150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34897122 - 34897078
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  34897122 actgaattatgtgattttctcaaattattagcggtgtcgacgtgt 34897078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 39954305 - 39954345
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  39954305 aattatgtgattttctcaaattattagcggtgtcggcgtgt 39954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 15816113 - 15816201
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||||||||||||||||| ||||| || |||  || ||| |||||||||||||| |||| |||||||  |||||||||||| |||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataat--tacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 15816201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 31109518 - 31109590
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||| |  |||| |||||||| | |||||||||||| |||||| |||||||||||||| |||||    
T  31109518 cgacactgacacatata--gttagactgaattgtttgattttctcaaattattaacggtgtcggcgtgtcagtgt 31109590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 31236601 - 31236643
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  31236601 tgaattatgtgattttctcaaattattagcagtgtcggcgtgt 31236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 13844596 - 13844662
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||| |||  || ||| ||||||||||||||||||| |||||||| ||||||||||||    
T  13844596 cgacaccgacacatataat--tacactcaattatgtgattttctcaaattattagcagtgtcggcgtgt 13844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 18067956 - 18067993
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18067956 actgaattatgtgattttctcaaattattagcggtgtc 18067993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 13436988 - 13437036
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  13436988 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 13437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 22652011 - 22651963
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  22652011 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 22651963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 27101548 - 27101508
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  27101548 aattatgtgattttttcaaattattagcggtgtcggcgtgt 27101508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 30271313 - 30271381
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcat 260  Q
    |||| ||||||||||||| |||| | |||||| |||||||||||| ||||| |||||||  ||||||||    
T  30271313 actgcattatgtgattttttcaaatgattagctgtgtcggcgtgtcagtgtccggtgtctgtgcttcat 30271381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 4611571 - 4611532
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  4611571 actgaattatgttattttctcaaattattagcggtgtcgg 4611532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 4786338 - 4786410
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| |||||||| |||  || |||||||||||||||||||| || ||||||  ||||||||||||| |||||    
T  4786338 cgacaccgacacatataat--tacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgt 4786410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 11944734 - 11944658
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||| ||||||||||| |||||||| |||  || ||||| |||||||||||| |||| |||||| | ||||||||||||    
T  11944734 gacatcaacacgacaccgacacatataat--tacactgagttatgtgattttatcaaattattaacagtgtcggcgtgt 11944658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 7658500 - 7658458
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||| |||||||||| ||||||| |||||||||||    
T  7658500 actgaattatgtaattttctcaaattattagtggtgtcggcgt 7658458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 27213582 - 27213540
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  27213582 tgaattatgtgattttctgaaattattagcagtgtcggcgtgt 27213540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 29510326 - 29510376
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  29510326 actgaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 29510376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 3025610 - 3025557
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagc 223  Q
    |||||||||||| || |||  || ||||||||||||||||||||||| ||||||||    
T  3025610 cgacactgacacctataat--tacactgaattatgtgattttctcaaattattagc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 25566910 - 25566841
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 229  Q
    |||||||||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| |||||    
T  25566910 gacaccaacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtc 25566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 36934705 - 36934657
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| || | ||||||||||||||| ||||| |||||    
T  36934705 tgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgt 36934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 25361961 - 25361881
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||| ||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| |||| || |||||||||||    
T  25361961 gtgtccgacaccgacacgacactgacacatataat--tacactgaattatgtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2896143 - 2896193
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2896143 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 2896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 36878498 - 36878448
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  36878498 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 36878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 34371783 - 34371714
Alignment:
Q  157 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||||    
T  34371783 cgacaccaacacgacaccgacacatataat--tacactgaattatgtgattttctcaa-ttattagcggtgtc 34371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 9828106 - 9828037
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||| ||||||||||||  || |||||||||||||||||| |||| ||||||| |||||||||||||    
T  9828106 acacgacaccgacacataaaat--tacactgaattatgtgattttatcaaattattagtggtgtcggcgtgt 9828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 10474999 - 10475043
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  10474999 actgaattatgtgattttctcaagttattagcggtgtcggcgtgt 10475043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 10572579 - 10572663
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 244  Q
    ||||||||||| |||| |||||||  |||  || || |||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  10572579 gacaccaacacaacaccgacacatttaat--tacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttc 10572663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 398787 - 398837
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  398787 actgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgt 398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 17831553 - 17831603
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  17831553 actgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 17831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 6427385 - 6427337
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  6427385 tgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 7918208 - 7918277
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||  || ||||||||||||||||||||||| ||||||| | |||| ||||||    
T  7918208 acacgacactgacacatataat--tacactgaattatgtgattttctcaaattattagtgatgtcagcgtgt 7918277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 12443482 - 12443526
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  12443482 actgaattatgtgattttctcaaattattagctgtgtcggcgtgt 12443526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 1262919 - 1262868
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  1262919 tgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcg 1262868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 5376522 - 5376572
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| |||||    
T  5376522 actgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgt 5376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 6415019 - 6415073
Alignment:
Q  188 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||| |||||||||||||||||| | ||||||| ||||||||||| |||||    
T  6415019 ttaaactgtattatgtgattttctcaaataattagcgatgtcggcgtgtcagtgt 6415073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 17754379 - 17754304
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  17754379 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 17754304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 44482305 - 44482234
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcgg 225  Q
    |||| ||||||| ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||| |||||    
T  44482305 gtgtccgacaccgacacgacaccgacacatataat--tacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 609482 - 609531
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 243  Q
    |||||||||| |||||||||| ||||||| ||||||||||||| ||||||    
T  609482 tgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtt 609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 19562643 - 19562696
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||| ||||||||    
T  19562643 actgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgttcg 19562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 113336 - 113292
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  113336 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 10233290 - 10233254
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgt 228  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10233290 actgaattatgtgattttctcaatttattagtggtgt 10233254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 25098577 - 25098617
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  25098577 actgaattatgtgattttctcaaattatcagcggtgtcggc 25098617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34298473 - 34298429
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  34298473 actgaattatgtgattttctcaaattattagtggtgtcggtgtgt 34298429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 9709854 - 9709807
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgt 9709807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 26238134 - 26238173
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  26238134 actgaattatgttattttctcaaattattagcggtgtcgg 26238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 27471588 - 27471639
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 243  Q
    ||||||||||||| ||||||||| ||||||||||| |||| |||| ||||||    
T  27471588 actgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtt 27471639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 38078685 - 38078736
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||||||||||||| |||| |||||||| |||||| ||||| ||||||||    
T  38078685 tgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcg 38078736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 39953146 - 39953210
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||| |||||||| |||  || ||| |||||||||||||||| || |||||||||||||||||||    
T  39953146 cgacaccgacacatacaat--tacactaaattatgtgattttctaaaattattagcggtgtcggcgt 39953210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 5898288 - 5898330
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||||||||| |||  |||||||||||||||||||    
T  5898288 actgaattatgtgattttttcagattattagcggtgtcggcgt 5898330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 9103681 - 9103627
Alignment:
Q  188 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||| |||||||||||||| |||| |||||| | |||||||||||| |||||    
T  9103681 ttaaactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 9103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 20157372 - 20157410
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcg 230  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  20157372 actgaattatgtgattttctcacattattagcggtgtcg 20157410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 38503357 - 38503307
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||| ||| |||||||||||| |||||||||||||||| |||| |||||    
T  38503357 actgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgt 38503307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 40285676 - 40285726
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||| ||||||||||| ||||||||||||| || |||| |||||    
T  40285676 actgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgt 40285726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 41877496 - 41877534
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  41877496 aattatgtaattttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 9690303 - 9690344
Alignment:
Q  201 tgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||| ||||||||||||||| |||||| |||||    
T  9690303 tgtgattttctcagtttattagcggtgtcagcgtgtcagtgt 9690344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29163381 - 29163447
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||| |||  |||| |||||||||||||||||  || || ||||||||||||||||||    
T  29163381 cgacaccgacacatataat--taaattgaattatgtgattttcctaaatttttagcggtgtcggcgtgt 29163447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 31015080 - 31015039
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcg 233  Q
    ||||||||||||||||||||||| |||||||| |||| ||||    
T  31015080 actgaattatgtgattttctcaaattattagctgtgtaggcg 31015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 36906033 - 36905984
Alignment:
Q  193 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||||||  ||||||||||||| || |||| |||||    
T  36906033 ctgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgt 36905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 40181908 - 40181871
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  40181908 actgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 1486731 - 1486775
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||    
T  1486731 actgaattatgtgattttttcaaattattagctgtgtcagcgtgt 1486775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 13436495 - 13436451
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||| || || |||||||| ||||||||||||    
T  13436495 actgaattatgtgatttccttaaattattagcagtgtcggcgtgt 13436451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 19909334 - 19909298
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgt 228  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  19909334 actgagttatgtgattttctcaaattattagcggtgt 19909298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 21378615 - 21378571
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| ||||| ||||||||||||| ||||||| ||||    
T  21378615 actgaattatgtaattttttcaatttattagctgtgtcggtgtgt 21378571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 21530722 - 21530682
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  21530722 aattatatgattttctcaaattattaacggtgtcggcgtgt 21530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 34712380 - 34712449
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| ||  ||| ||| |||||||| |||||||||| |||||||| ||| ||| ||||    
T  34712380 acacgacactgacacatataa--ttacactaaattatgttattttctcaaattattagcagtgacggtgtgt 34712449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 3966579 - 3966481
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtc 250  Q
    ||||| ||||||  ||||||||| |||||||| |||  || |||||||| |||||||||||||| ||||||||||||||||| ||| ||||| | |||||    
T  3966579 tgtgtccgacactgacacgacaccgacacatataat--tacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtccagtgtc 3966482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 30098361 - 30098295
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcat 260  Q
    ||||||||||||||||||||| |||||| |||| ||| ||||| ||||| |||||||| ||||||||    
T  30098361 tgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtgcttcat 30098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 19737506 - 19737582
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaac 270  Q
    |||||||||| |||||||||| |||||| |||| || |||||| ||||| || |||||||||||||  |||||||||    
T  19737506 tgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccgttgtccttgcttcagagattgaaac 19737582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 28588696 - 28588740
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  28588696 actgaattatgtgattttctcaaattattaccggtgtcggcgtgt 28588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 27932272 - 27932229
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtg 235  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  27932272 actgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 39698616 - 39698528
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||||||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||| |||||| |||||    
T  39698616 gtgtccgacaccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgt 39698528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 27144496 - 27144450
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  27144496 aattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgt 27144450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 17123080 - 17123035
Alignment:
Q  197 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 17123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 31084358 - 31084310
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  31084358 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 31084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 2436956 - 2436909
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  2436956 gaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgt 2436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 6035585 - 6035470
Alignment:
Q  124 acactccttagattaagcgtgtccccatgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagc 223  Q
    |||||||| |||||| |||||||||   ||||  | |||| ||||||||| |||| ||| |||  || |||||||||| | |||| ||||| ||||||||    
T  6035585 acactcctcagattaggcgtgtcccggcgtgtctgtcaccgacacgacaccgacaaatataat--tacactgaattatattattt-ctcaaattattagc 6035489  T
Q  224 ggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||| |||||    
T  6035488 ggtgtcggcgtgtcagtgt 6035470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 6247659 - 6247609
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| |||||    
T  6247659 actgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgt 6247609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 6326319 - 6326369
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| |||||||||| ||| ||||| ||||||||||| |||||    
T  6326319 actgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgt 6326369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 14674302 - 14674256
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||||    
T  14674302 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 14674256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 19579734 - 19579696
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  19579734 aattatgtgattttctcaaattattagctgtgtcggcgt 19579696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 21191078 - 21191128
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| |||||||| |||||||| ||| |||||    
T  21191078 actgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgt 21191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 6471911 - 6471948
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6471911 actgaattatgtgattttctcaaattattagccgtgtc 6471948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 9449504 - 9449463
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtg 235  Q
    ||||||||||||||||||||| ||||||  ||||||||||||    
T  9449504 tgaattatgtgattttctcaaattattattggtgtcggcgtg 9449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 21576767 - 21576820
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||||||||||||||| |||| |||||||| |||| ||||| | ||||||||    
T  21576767 actgaattatgtgattttttcaaattattagctgtgttggcgtatcagtgttcg 21576820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 26716178 - 26716141
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  26716178 gaattatgtgattttctcaaattattagcagtgtcggc 26716141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 26985918 - 26985881
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  26985918 gaattatgtgattttctcaaattattagcagtgtcggc 26985881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 30502388 - 30502446
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30502388 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 30542731 - 30542789
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30542731 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 32766930 - 32767004
Alignment:
Q  155 ttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    ||||||||| |||||||||  ||||||| |||  || | |||||| || ||||||||||| ||||||||||||||||    
T  32766930 ttcgacaccgacacgacacaaacacatataat--tacattgaattgtgcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 36838606 - 36838544
Alignment:
Q  164 aacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||||||||| |||||||| |||  || ||| |||||||| |||||||||| |||||||||||||    
T  36838606 aacacgacaccgacacatataat--tacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 4344779 - 4344727
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 244  Q
    |||||||||||| ||||| |||| |||||| ||||||| |||||| |||||||    
T  4344779 actgaattatgtcattttttcaaattattatcggtgtcagcgtgttagtgttc 4344727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 11685999 - 11685926
Alignment:
Q  167 acgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||| |||||||| |||  || ||| ||||||| || |||||||| ||||||||||||||||| ||| |||||    
T  11685999 acgacaccgacacatataat--tacactaaattatgcgactttctcaaattattagcggtgtcggcatgtcagtgt 11685926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34879387 - 34879343
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||| |||||||||||| || ||||||||| ||||||||    
T  34879387 actgaattatatgattttctcaaatttttagcggtgccggcgtgt 34879343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 35017070 - 35017030
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||| ||||||| ||| |||||||||    
T  35017070 aattatgtgattttctcaaattattagtggtttcggcgtgt 35017030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 38816729 - 38816761
Alignment:
Q  204 gattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||| |||||||||||||||||||||    
T  38816729 gattttctcaaattattagcggtgtcggcgtgt 38816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 21616799 - 21616755
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  21616799 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 21616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 21782840 - 21782891
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 243  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  21782840 actgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtt 21782891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||||||||||||| |||||||| |||  || ||||||||||| ||||||||||| ||||||||||||||    
T  44860388 acaccaacacgacaccgacacatataat--tacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 31284080 - 31284035
Alignment:
Q  197 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  31284080 attatgtgattttctcaaattattagcagtgtcggcgtgtaagtgt 31284035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 37411266 - 37411306
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  37411266 actgaattatgtgattttctcaaattattagcggtgtcggc 37411306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 18889575 - 18889651
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 230  Q
    |||| |||||| |||| ||||| ||||||||  ||  || |||||||||||||||||||||||||||||||||| ||||    
T  18889575 gtgtccgacacaaacaagacaccgacacatatgat--tacactgaattatgtgattttctcaatttattagcggcgtcg 18889651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 23718063 - 23718013
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||| |||||||| |||||||||||||||| |||| |||||    
T  23718063 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 23718013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 24105735 - 24105685
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||| |||||||| |||||||||||||||| |||| |||||    
T  24105735 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 24105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 28677946 - 28677904
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  28677946 actgaattatgtgattttttcaaattattagcggtgtcggcgt 28677904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 24894426 - 24894357
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg-gtgtccttgcttcat 260  Q
    |||||||||||||||||| | || |||||||| |||||||||||| ||||| || |||||| ||||||||    
T  24894426 actgaattatgtgatttttttaaattattagctgtgtcggcgtgtcagtgtccgtgtgtccgtgcttcat 24894357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31808134 - 31808064
Alignment:
Q  170 acactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||| |||  || |||||||||||||||||| | || |||||||||||||||| |||| |||||    
T  31808134 acactgacacatataat--tacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgt 31808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 18276558 - 18276518
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  18276558 actgaattaagtgattttctcaaattattagcggtgtcggc 18276518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 10535781 - 10535823
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgt 234  Q
    |||||||||||| |||||||||| |||||| ||||||||||||    
T  10535781 actgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 18420458 - 18420500
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  18420458 tgaattatgtgattttctcaaattattagcagtgttggcgtgt 18420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 21374721 - 21374771
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| ||||| |||| |||||||| |||||||||||| |||||    
T  21374721 actgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgt 21374771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 30404872 - 30404922
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| |||||| | |||||||||||| |||||    
T  30404872 actgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgt 30404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 36409619 - 36409689
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||| ||||| |||||||||    ||| ||| |||||||||||||| |||| |||| ||||||||||||    
T  36409619 gacaccaacatgacaccgacacataa----ttacactaaattatgtgattttttcaaattatcagcggtgtcggc 36409689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 896246 - 896198
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| |||||    
T  896246 tgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 19574015 - 19573971
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| ||||||| || |||||| ||||||||||||||    
T  19574015 actgaattatgttattttcttaaattattatcggtgtcggcgtgt 19573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 35447904 - 35447960
Alignment:
Q  187 gttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 243  Q
    |||| |||||||||||| |||||||  | ||||||||| |||| |||||||||||||    
T  35447904 gttatactgaattatgtaattttctttaattattagcgatgtcagcgtgtaagtgtt 35447960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 36756327 - 36756416
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| |||||||||| ||||| || ||  ||| |||||||||||| ||||  |||| |||||||  |||||| ||||| |||||    
T  36756327 tgtgttcgacactaacacgacaccgacacttataa--ttacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgt 36756416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 37559012 - 37558964
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||  ||| |||||||| |||||||||||| |||||    
T  37559012 tgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgt 37558964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 42832298 - 42832342
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| ||||| |||||||||| |||||||||||||||| ||||    
T  42832298 actgaaatatgtaattttctcaaattattagcggtgtcggtgtgt 42832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 92844 - 92794
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  92844 actgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgt 92794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 4987313 - 4987365
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 244  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| |||||||    
T  4987313 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgttc 4987365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 8039824 - 8039901
Alignment:
Q  157 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||| ||||||||| |||||||| |||  || |||||||||| | |||||||||| ||||||||||||| |||||||    
T  8039824 cgacaccgacacgacaccgacacatataat--tacactgaattatataattttctcaaattattagcggtgttggcgtgt 8039901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 8383294 - 8383250
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  8383294 actgaattatatgattttctcaaattattagcggtgtcggcgtgt 8383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 26290431 - 26290358
Alignment:
Q  167 acgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||  ||||| ||| |||||||||||||||| ||||||  ||||||||||||| |||||    
T  26290431 acgacactgacacatataat--taaaccgaactatgtgattttctcaaattattaatggtgtcggcgtgtcagtgt 26290358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 8412963 - 8413038
Alignment:
Q  188 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattga 263  Q
    ||||||||||||||||| ||||||||| |||||||  |||||||  ||| | ||| |||||||| |||||||||||    
T  8412963 ttaaactgaattatgtgtttttctcaaattattagttgtgtcggtctgtcaatgtccggtgtccgtgcttcattga 8413038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 5407271 - 5407313
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  5407271 tgaattatgtgattttctcaaatttttagcggtgtcggcgtgt 5407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 10690284 - 10690333
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 241  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||    
T  10690284 actgaattatgtgattttctcagattattagcggtgtccgagtgtaagtg 10690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 10954989 - 10954936
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| ||||||||    
T  10954989 actgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcg 10954936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 49505154 - 49505220
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||| || ||||||    
T  49505154 cgacactgacacatataat--tacactaaattatgtgattttctcaaattattagcggtctctgcgtgt 49505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 5441055 - 5441103
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||| || ||||||||| |||||||| |||||    
T  5441055 tgaattatgtgattttctcaaatttttagcggtgacggcgtgtcagtgt 5441103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 7928509 - 7928448
Alignment:
Q  168 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    |||||| |||||||| |||  || |||||||||||||||||| |||| ||||||||||||||||    
T  7928509 cgacaccgacacatataat--tacactgaattatgtgattttttcaaattattagcggtgtcgg 7928448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 12704044 - 12704000
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||    
T  12704044 actgaattatgtgcttttctcaaattattagtggtgtcggcgtgt 12704000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 34307802 - 34307846
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||    
T  34307802 actgaaatatgtgattttctcaaattattagcggtgtcagcgtgt 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 40052367 - 40052319
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  40052367 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 40052319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 2620070 - 2620125
Alignment:
Q  187 gttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||| ||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  2620070 gttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgt 2620125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 9800074 - 9800027
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| |||||||||| ||||||| ||||||||||||| |||||    
T  9800074 gaattatgtaattttctcaaattattagaggtgtcggcgtgtcagtgt 9800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 11313797 - 11313861
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 231  Q
    |||||||||| ||||||| |||  || ||| ||||||||||||||||||| |||||||| |||||||    
T  11313797 acacgacactaacacatataat--tacactaaattatgtgattttctcaaattattagcagtgtcgg 11313861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 14979218 - 14979175
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtg 235  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  14979218 actgaattatgtgattttttcaaattattagctgtgtcggcgtg 14979175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25064982 - 25064902
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||| |||||||||||||| ||  ||||||||    ||| ||| |||||||||||||| |||| | |||||||||||||||||||    
T  25064982 gtgtccgacaccaacacgataccaacacataa----ttacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgt 25064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 1438841 - 1438791
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| || |||||| |||||| |||| |||||    
T  1438841 actgaattatgtgattttctcaaattgttagcgatgtcggtgtgtcagtgt 1438791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 21479155 - 21479105
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  21479155 actgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 21479105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 21720801 - 21720751
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||||| |||||    
T  21720801 actgaattatgagatattctcaaattattatcggtgtcggcgtgtcagtgt 21720751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 14209188 - 14209106
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||| ||||||| ||||||||||||||| |  |||  || |||||||||||||||||| | || |||||||  ||||||||||||    
T  14209188 gtgtccgacaccgacacgacactgacacttgtaat--tacactgaattatgtgattttttaaaattattagttgtgtcggcgtgt 14209106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 24633800 - 24633763
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  24633800 gaattatgtgattttctcaaattattagtggtgtcggc 24633763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 28678372 - 28678290
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||||||| ||  ||| ||| |||||||||||||| | || |||||||| | |||||| ||| |||||    
T  28678372 gacaccaacacgacaccgacacatacaa--ttatactaaattatgtgattttattaaattattagcagcgtcggcatgtcagtgt 28678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 32429402 - 32429455
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    |||||||||||||||||||| || ||||||||| |||||| |||| | ||||||    
T  32429402 actgaattatgtgattttcttaaattattagcgttgtcggagtgtcaatgttcg 32429455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4990989 - 4991033
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| ||||||||||  ||||||||||||||| ||||    
T  4990989 actgaattatgtaattttctcaaactattagcggtgtcggagtgt 4991033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 11493383 - 11493427
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||    
T  11493383 actgaattatgtgattttctcacattattagtggtgtcgacgtgt 11493427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 11610558 - 11610514
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| | || ||||||||||||| |||||||    
T  11610558 actgaattatgtgatttttttaaattattagcggtgttggcgtgt 11610514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 11666008 - 11665931
Alignment:
Q  163 caacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||| |||||||| ||  ||| ||| |||| ||||||||| |||| ||||||||| |||||| |||| |||||    
T  11666008 caacacgacaccgacacatataa--ttacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgt 11665931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 14829724 - 14829677
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  14829724 tgaattatgtgatttt-tcaaattattagctgtgtcggcgtgtcagtgt 14829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 16192772 - 16192816
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| |||||||||| |||||| ||||||||| ||||    
T  16192772 actgaattatgttattttctcaaattattaacggtgtcggtgtgt 16192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 23870581 - 23870625
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||| ||||||| |||| ||||||||||||||| |||||    
T  23870581 actgaattatatgattttttcaaattattagcggtgtcgacgtgt 23870625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 25074822 - 25074782
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  25074822 aattatgtcattttctcaaattattatcggtgtcggcgtgt 25074782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 26508147 - 26508103
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||    
T  26508147 actgaattatgtgattttttcaaattattagctgtgtcagcgtgt 26508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 28918038 - 28917994
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| ||||||||  |||||||||||    
T  28918038 actgaattatgtgattttttcaaattattagctatgtcggcgtgt 28917994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 32804566 - 32804602
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggc 232  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  32804566 aattatgtgattttctcaaattattaacggtgtcggc 32804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34910354 - 34910310
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  34910354 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 34910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 9737 - 9809
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||||||||||||||| |||||||| |||  || ||||||||| ||||||||||||| ||||||| || ||||||    
T  9737 gacaccaacacgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagtggcgtcggc 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 1103 - 1028
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  1103 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 13437 - 13387
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  13437 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 21890 - 21940
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  21890 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 21940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 51848 - 51798
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  51848 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 51798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 20239 - 20165
Alignment:
Q  160 caccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||||||||    
T  20239 caccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 20165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 53217 - 53173
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  53217 actgaattatgtgattttctcaaattattggcggtatcggcgtgt 53173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 135309 - 135378
Alignment:
Q  165 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||| |||||||| |||  || || |||||||||||||||||||| |||||||| ||||||| ||||    
T  135309 acacgacaccgacacatataat--tacacagaattatgtgattttctcaaattattagcagtgtcggtgtgt 135378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 44516 - 44584
Alignment:
Q  159 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 229  Q
    ||||| |||||| || |||||||| |||  || ||||||||||||||||||||||| || |||||||||||    
T  44516 acaccgacacgataccgacacatataat--tacactgaattatgtgattttctcaaatttttagcggtgtc 44584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 28885 - 28834
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 245  Q
    ||||||||| |||||||| || |||||| |||||||||||||| ||||||||    
T  28885 tgaattatgcgattttcttaaattattaacggtgtcggcgtgttagtgttcg 28834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 192274 - 192321
Alignment:
Q  195 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    ||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  192274 gaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgt 192321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 263362 - 263430
Alignment:
Q  158 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||||| ||||||||||||||| || |||  || ||||||||||||| ||||||||| |||||||| ||||    
T  263362 gacaccgacacgacactgacacttataat--tacactgaattatgtggttttctcaaattattagcagtgt 263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 241669 - 241581
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 242  Q
    |||| ||||||||||||||||| |||||  | |||  || ||| ||||||||||||||  ||| |||||||| |||||||||||| |||||    
T  241669 gtgtccgacaccaacacgacaccgacactcataat--tacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgt 241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 26428 - 26386
Alignment:
Q  194 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||    
T  26428 tgaattatgtgattttctcaaattattagtggtgtcgacgtgt 26386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 3833 - 3911
Alignment:
Q  152 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 232  Q
    |||| ||||||||||||||||||||||| |  ||  ||| |||||||||||||||||| | || |||||| | ||||||||    
T  3833 gtgtccgacaccaacacgacactgacacttgtaa--ttacactgaattatgtgatttttttaaattattaaccgtgtcggc 3911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 68225 - 68299
Alignment:
Q  151 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtg 227  Q
    ||||||||||||| | ||||||||||||| || ||  ||| ||| |||||| |||||||||||| |||||| |||||    
T  68225 tgtgttcgacaccgatacgacactgacacctataa--ttatactaaattatatgattttctcaaattattaacggtg 68299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 1677 - 1637
Alignment:
Q  196 aattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  1677 aattatatgattttctcaaattattaacggtgtcggcgtgt 1637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 14567 - 14523
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  14567 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 14523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 33385 - 33429
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||    
T  33385 actgaattatgttattttttcaaattattagctgtgtcggcgtgt 33429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 63810 - 63774
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgt 228  Q
    |||||||||||| |||||||||| |||||||||||||    
T  63810 actgaattatgtaattttctcaaattattagcggtgt 63774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 46719 - 46675
Alignment:
Q  192 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 236  Q
    |||||||||||||||||| |||| |||||| | ||||||||||||    
T  46719 actgaattatgtgattttttcaaattattaactgtgtcggcgtgt 46675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University