View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_4 (Length: 412)
Name: NF12170_high_4
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 361
Target Start/End: Complemental strand, 42224174 - 42223843
Alignment:
| Q |
30 |
gagccttgttcacgacgtcacgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggta |
129 |
Q |
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| T |
42224174 |
gagccttgttcacgacgtcgcgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggta |
42224075 |
T |
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| Q |
130 |
tgtaatcatcaaacaaacacttaatcttaattttttgtttggaagcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaact |
229 |
Q |
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| T |
42224074 |
tgtaatcatcaaacaaacacttaatcttaatttttggtttggatgcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaact |
42223975 |
T |
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| Q |
230 |
ggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttc |
329 |
Q |
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| T |
42223974 |
ggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttc |
42223875 |
T |
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| Q |
330 |
gacaaattcatcactgtaaacaagctaaatcc |
361 |
Q |
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| T |
42223874 |
gacaaattcatcactgtaaacaaactaaatcc |
42223843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Complemental strand, 42223822 - 42223792
Alignment:
| Q |
382 |
cctcgacatattgatgaaatagacgtaaagc |
412 |
Q |
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| T |
42223822 |
cctcgacatattgatgaaatagacgtaaagc |
42223792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 36675871 - 36675959
Alignment:
| Q |
219 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
307 |
Q |
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| T |
36675871 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36675959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 36685953 - 36686041
Alignment:
| Q |
219 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
307 |
Q |
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| T |
36685953 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36686041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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