View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_5 (Length: 373)
Name: NF12170_high_5
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 41747001 - 41747354
Alignment:
| Q |
1 |
gtttgcgcacactgaaatttcaggttttactaaaacaatacaatatttggtaagaattaaaggtttttatatatcttcaaatttgcggagagaagattgc |
100 |
Q |
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| T |
41747001 |
gtttgcgcacactgaaatttcaggttttactaaaacaatacaatattcggtaagaattagaggtttttat----cttcaattttgcggagagaagattgc |
41747096 |
T |
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| Q |
101 |
accctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctc |
200 |
Q |
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| T |
41747097 |
accctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttctttgctc |
41747196 |
T |
|
| Q |
201 |
ctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaa |
300 |
Q |
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| T |
41747197 |
ctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaa |
41747296 |
T |
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| Q |
301 |
agttattaggtgcaaaagttagttatactaattaattagttaagttcgttagttcgtt |
358 |
Q |
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| T |
41747297 |
agttattaggtgcaaaagttagttatactaattaattagttaagttcgttagttcgtt |
41747354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 289
Target Start/End: Original strand, 41753477 - 41753647
Alignment:
| Q |
119 |
tgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctcatcgacacttc |
218 |
Q |
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| T |
41753477 |
tgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttctcctttatcatccacacttc |
41753576 |
T |
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| Q |
219 |
cacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgca |
289 |
Q |
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| T |
41753577 |
cacaattatttttcaaaccatctcccacacaacacgctttcaatggattcatcagtgttgagttttctgca |
41753647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 41732441 - 41732615
Alignment:
| Q |
109 |
gtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctca |
208 |
Q |
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| T |
41732441 |
gtaaacttcataccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcacatacactatatttccttgctcctttatta |
41732540 |
T |
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| Q |
209 |
tcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagttt |
283 |
Q |
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| T |
41732541 |
tcaacacttccacaaaaatatttcaaatcctctcccttacaacacggttgcaacggattcatcactgttgagttt |
41732615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 301
Target Start/End: Original strand, 41757829 - 41758043
Alignment:
| Q |
87 |
ggagagaagattgcaccctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacact |
186 |
Q |
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| T |
41757829 |
ggagagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaact |
41757928 |
T |
|
| Q |
187 |
atatttctttgctcctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgct |
286 |
Q |
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| T |
41757929 |
gtatttcttttctccattatcatccacttttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttct |
41758028 |
T |
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| Q |
287 |
gcataatggagaaaa |
301 |
Q |
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| T |
41758029 |
gtacaatggagaaaa |
41758043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 41738618 - 41738650
Alignment:
| Q |
240 |
ctcccacacaacatggttgcaatggattcatca |
272 |
Q |
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| T |
41738618 |
ctcccacacaacatggttgcaacggattcatca |
41738650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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