View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_6 (Length: 360)
Name: NF12170_high_6
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 1801493 - 1801587
Alignment:
| Q |
13 |
aatattaaaaagaaataaaatagagttttaccgtctattgtggttatgtccaactcgaaagagattgattgttatgcataaggatacctgatttc |
107 |
Q |
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| T |
1801493 |
aatattaaaaagaaataaaatagagttttaccgtctattgtggttatgtccaactcgaaagagattgattgttatgcataaggatacctgatttc |
1801587 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 1801780 - 1801836
Alignment:
| Q |
303 |
tttgatgataattgggatttgatatggaggcaaagcaa-gcaatttgagcataaatt |
358 |
Q |
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| T |
1801780 |
tttgatgataattgggatttgatatggaggcaaagcaaggcaatttgagcataaatt |
1801836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 1801649 - 1801690
Alignment:
| Q |
171 |
ggacaacaattatcacataacttgccgttgccttgtacacat |
212 |
Q |
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| T |
1801649 |
ggacaacaatcatcacataacttgccgttgccttgtacacat |
1801690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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