View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_low_1 (Length: 1043)
Name: NF12170_low_1
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 11 - 720
Target Start/End: Complemental strand, 18679420 - 18678713
Alignment:
| Q |
11 |
cacagaacaacagcaacatgttcaaatttcgcgaccttgtagcgctatagcgcctctatttgacaacactgattcaactagaataataatgtagaagcag |
110 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18679420 |
cacagaacaacagcgacatgttcaaattttgcgaccttgtagcgctatagcgcctctatttgacaacactgattcaactagaataataatggagaagcag |
18679321 |
T |
|
| Q |
111 |
ccaaaacttacctgtaatattgacttcgacatggcaactgcatcaaccggcacaacagatccaattagaagaccggttaataaaggcgtaacaataaccg |
210 |
Q |
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| T |
18679320 |
ccaaaacttacctgtaatattgacttcgacatggcaactgcatcaaccggcacaacagatccaattagaagaccggttaataaaggcgtaacaataaccg |
18679221 |
T |
|
| Q |
211 |
acgcaatagtggtatagcttgtaagaacaatgcatagggctacatcccctttgcttataaagcttgcatagctagataactgagctcctgaaacacaagc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18679220 |
acgcaatagtggtatagcttgtaagaacaatgcatagggctacatcccctttgcttataaagcttgcatagctagataactgagctcctgaaacacaagc |
18679121 |
T |
|
| Q |
311 |
tgtgaggacaaatcctgcataaaacattctaggcaagccaaaagcctttacaatcaacacaccaagtacaggtttcagtacatattgagcaataaatcca |
410 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18679120 |
tgtgaggacaaagcctgcataaaacattctaggcaagccaaaagcctttgcaatcaacacaccaagtacaggtttcagtacatattgagcaataaatcca |
18679021 |
T |
|
| Q |
411 |
atggaaagtggtaaaggcctgcaacagaatcatcaaattaatgaatattgaaagaagttgaattactccacttattgaaaaccagacaaaaattaaagta |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18679020 |
atggaaagtggtaaaggcctgcaacagaatcatcaaattaatgaatattgaaagaagttgaattactccacttattgaaaaacagacaaaaattaaagta |
18678921 |
T |
|
| Q |
511 |
gaaatgagagtcaaaccttttgaatgcaagagcaaaatcttccatggatagtcctatcccaatggacaacataatcccaccaagtgcaggagcatataac |
610 |
Q |
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| T |
18678920 |
gaaatgagagtcaaaccttttgaatgcaagagcaaaatcttccatggatagtcctatcccaatggacaacataatcccaccaagtgcaggagcatataac |
18678821 |
T |
|
| Q |
611 |
tctttagataccctgatcagtaaaacaagttgaaatttcagttctttcattttaataccattcctttctatatgcgtcaactaactgacagaattaaaaa |
710 |
Q |
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| T |
18678820 |
tctttagataccctgatcagtaaaacaagttgaaatttcagttctttcattttaat--cattcctttctatatgcgtcaactaactgacaggattaaaaa |
18678723 |
T |
|
| Q |
711 |
ttcataatcg |
720 |
Q |
| |
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|||||||||| |
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| T |
18678722 |
ttcataatcg |
18678713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 776 - 1043
Target Start/End: Complemental strand, 18678657 - 18678390
Alignment:
| Q |
776 |
tagaataactttggttacacaatatattgattgacaaattggagtcagaatacagatatagattcctgtagacaaaatacccggcctgcgttcagatagt |
875 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
18678657 |
tagaataactttggttacacaatatattgattgacaaattggagtcagaatacagatatggattcctgtagacaaaataccctgcctgcgttcagatagt |
18678558 |
T |
|
| Q |
876 |
cagcacattgatgaacaatttgatcaagactagacaattcgaaaaatcaagcttgaaatctaaaacgtctaatcttgatccaacggccacagatgtaccg |
975 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18678557 |
cagcacattgatgaacaatttgatcaagactagacaattcgaaaaatcaagcttgaaatctaaaacgtctaatcttgatccaacggccacagatgtaccg |
18678458 |
T |
|
| Q |
976 |
actatgcaaatgcagagtatcttaaacaagtgtatccatttccatagcagagaggcctaatataatac |
1043 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18678457 |
actatgcaaatgcagagtatcttaaacaagtgtatccatttccatagcagagaggcctgatataatac |
18678390 |
T |
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Back To:
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