View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12171_high_1 (Length: 311)
Name: NF12171_high_1
Description: NF12171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12171_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 26676 - 26936
Alignment:
| Q |
22 |
catcatcatctatcacactttccacattcagtaaactacatgatacttttgagcctgcggtatcttgaactgaattttgaagaatcaatttgcnnnnnnn |
121 |
Q |
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| T |
26676 |
catcatcatctatcacactttccacattcagtaaactacatgatacttttgagcctgcagtatcttgaactgaattttgaagaatcaatttgcttttttt |
26775 |
T |
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| Q |
122 |
ctgaaaacaaactgaagaattgcattcaacaaggtaaacatagtgcataatataaataattagctattaggtatacgatgtaactaagaaacttcagtta |
221 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26776 |
ctgaaaacaaactgaagaattgcattcaacaaagtaaacatagtgcataatataaataattagctattagttatacgatgtaactaagaaacttcagtta |
26875 |
T |
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| Q |
222 |
actgctnnnnnnnctcaagcataaactaaatttgatcttaattggtgtctaaggtagatat |
282 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26876 |
actgctaaaaaaactcaagcataaactaaatttgatcttaattggtgtctaaggtagatat |
26936 |
T |
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