View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12172_high_10 (Length: 333)

Name: NF12172_high_10
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12172_high_10
NF12172_high_10
[»] chr5 (2 HSPs)
chr5 (1-323)||(17486811-17487133)
chr5 (1-323)||(6779945-6780267)
[»] chr3 (2 HSPs)
chr3 (1-180)||(43099540-43099719)
chr3 (189-323)||(43097422-43097556)
[»] chr8 (1 HSPs)
chr8 (226-323)||(22424517-22424614)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 17486811 - 17487133
Alignment:
Q  1 tcgttgcaaattcttctgaatttaaacgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagaca 100  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||| ||||||||||| || |||||||| ||||||||||    
T  17486811 tcgttgcaaattcttctgaatttaaacggtatccaaaagattccatcctaccaataagatcaacaacacactccttataatctcgggaataaagaagaca 17486910  T
Q  101 cgtgaggaggtaattacaaatcattggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcatatagcctatgttccttacaa 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||  |||||||| |||||| ||||||||||||    
T  17486911 cgtgaggaggtgattacaaatcattggcttcaacatgaaacccttctcaagactgtaaagaaatatttttactgcgtcatgtagcctttgttccttacaa 17487010  T
Q  201 agacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactcatcaagaacagagaatataattaatgcttcagatacttttcctgcct 300  Q
    || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  17487011 aggcctctgatcaaatgtacacaacttgtagcgttgattttgatattgaactcatcaagaacagataatataattaatgcttcagatacttttcctgctt 17487110  T
Q  301 gacagaacccaataagtagaatt 323  Q
    |||||||||||||||||||||||    
T  17487111 gacagaacccaataagtagaatt 17487133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 6780267 - 6779945
Alignment:
Q  1 tcgttgcaaattcttctgaatttaaacgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagaca 100  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||| |||||||||||||||| || |||||||| ||||||||||    
T  6780267 tcgttgcaaattcttctgaatttaaacggtatccaaaagattccatcctatcaataagatcaacagcacactccttataatctcgggaataaagaagaca 6780168  T
Q  101 cgtgaggaggtaattacaaatcattggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcatatagcctatgttccttacaa 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||  ||| |||| |||||| ||||||||||||    
T  6780167 cgtgaggaggtgattacaaatcattggcttcaacatgaaacccttctcaagactgtaaagaaatatttttactgcatcatgtagcctctgttccttacaa 6780068  T
Q  201 agacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactcatcaagaacagagaatataattaatgcttcagatacttttcctgcct 300  Q
    || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |    
T  6780067 aggcctctgatcaaatgtacacaacttgtagcgttgattttgatattgaactcatcaagaacagataatataattaatgcttcggatacttttcctgctt 6779968  T
Q  301 gacagaacccaataagtagaatt 323  Q
    |||||||||||||||||||||||    
T  6779967 gacagaacccaataagtagaatt 6779945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 43099719 - 43099540
Alignment:
Q  1 tcgttgcaaattcttctgaatttaaacgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagaca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  43099719 tcgttgcaaattcttctgaatttaaacggtatcccaaagattccatcccaccaataagatcaacagcacactccttataagctcgggaagaaagaagaca 43099620  T
Q  101 cgtgaggaggtaattacaaatcattggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcat 180  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||  ||||||||    
T  43099619 cgtgaggaggtaattacaaatcattggcttcaacatgaaaaccttctcaagattttaagaaaatatttttactgcgtcat 43099540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 189 - 323
Target Start/End: Complemental strand, 43097556 - 43097422
Alignment:
Q  189 tgttccttacaaagacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactcatcaagaacagagaatataattaatgcttcagata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43097556 tgttccttacaaagacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactcatcaagaacagagaatataattaatgcttcagata 43097457  T
Q  289 cttttcctgcctgacagaacccaataagtagaatt 323  Q
    |||||||||||||||| ||||||||||||||||||    
T  43097456 cttttcctgcctgacataacccaataagtagaatt 43097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 22424614 - 22424517
Alignment:
Q  226 ttgtagcattgattttgatattgaactcatcaagaacagagaatataattaatgcttcagatacttttcctgcctgacagaacccaataagtagaatt 323  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22424614 ttgtagcgttgattttgatattgaactcatcaagaacagataatataattaatgcttcagatacttttcctgcttgacagaacccaataagtagaatt 22424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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