View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_11 (Length: 327)
Name: NF12172_high_11
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 44109659 - 44109985
Alignment:
| Q |
1 |
tttagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactag |
100 |
Q |
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| T |
44109659 |
tttaggatcctctctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactat |
44109758 |
T |
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| Q |
101 |
aaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatg |
200 |
Q |
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| T |
44109759 |
aaaaacagtactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatg |
44109858 |
T |
|
| Q |
201 |
ttaaaacagtgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccag |
300 |
Q |
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| T |
44109859 |
ttaaaacagtgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccag |
44109958 |
T |
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| Q |
301 |
tgccttattgtttcaaatcttctctca |
327 |
Q |
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| T |
44109959 |
ggccttattgtttcaaatcttctctca |
44109985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 40276583 - 40276890
Alignment:
| Q |
13 |
tctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactagaaaaacaatact |
112 |
Q |
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| T |
40276583 |
tctatgtaattgatcatctccatccccttcctgagctccacaatttgacacatctttgtctggatttggagattatc---ttcagtagaaaaacattaat |
40276679 |
T |
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| Q |
113 |
ggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgcctta----tatcctgcttaatctgcctcatttaaatgttaaaaca |
208 |
Q |
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| T |
40276680 |
ggaattcctcttaaggtgtcctaaattggaagctcttgtttttcctcaggtacaccttaattatatcctgcttaatctgtctcatttcattgttaaaaca |
40276779 |
T |
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| Q |
209 |
gtgatatt-acttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagtgcctta |
307 |
Q |
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| T |
40276780 |
atgatatttacttctatccactaacttgttaattgattccaatttagggaattggcaaactcgtggataagagaaactatgcataaattccagtgcctta |
40276879 |
T |
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| Q |
308 |
ttgtttcaaat |
318 |
Q |
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| T |
40276880 |
ttgtttcaaat |
40276890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 40450710 - 40450397
Alignment:
| Q |
13 |
tctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctg-catcggaggattaaacctttcactagaaaaacaatac |
111 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| ||| | |||| |||||||||| || |
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| T |
40450710 |
tctatgtaattgatcatctccatctccttcctgagttccacaatttgacacatctttgtctgactttggag-attgac---ttcagtagaaaaacattaa |
40450615 |
T |
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| Q |
112 |
tggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgct--taatctgcctcatttaaatgttaaaacag |
209 |
Q |
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||||||| ||| |||||||||||||||||||| | |||||| | |||||||||| ||||||||||| || |||||| || ||||| | |||||| || |
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| T |
40450614 |
tggaatttctcctaaggtgtcctaaactggaagcacttgttttacctctggtacaccttatatccttcttataatctcccccatttctaggttaaatcaa |
40450515 |
T |
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| Q |
210 |
tgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagtgccttatt |
309 |
Q |
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| T |
40450514 |
tgatattatttccatccattgacttgttaattgattcttatttaggcagttaccaaattcttggatatgaatgactcgacattaattccagtgccttgtt |
40450415 |
T |
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| Q |
310 |
gtttcaaatcttctctca |
327 |
Q |
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|||||||||||||||||| |
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| T |
40450414 |
gtttcaaatcttctctca |
40450397 |
T |
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