View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_13 (Length: 310)
Name: NF12172_high_13
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 42624557 - 42624360
Alignment:
| Q |
28 |
accatgagttataaaagttcactttttgtattcattttcaaaaccgttttgagttataatagtttaagaaatccaaaatgcaatttaatttactctttat |
127 |
Q |
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| T |
42624557 |
accatgagttataaaagttcactttttgtattcattttcaaaaccgttt-gagttataatagtttaagggatccaaaatgtaatttaatttactctttat |
42624459 |
T |
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| Q |
128 |
attatgcagtattataagtttcacttcctttggaaatagacttctcctaaaccattgattaattaatttaatacaatgaaaaacttccactaattaata |
226 |
Q |
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| T |
42624458 |
attatgcagtattataagtttcacttccttttgaaatagacttctcctaaaccattgattaattaatttaatacaatgaaaaacttccactaattaata |
42624360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 42624362 - 42624313
Alignment:
| Q |
261 |
atatatcatatgtttctactagtaaaattcaattctaattagtaacttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42624362 |
atatatcatatgtttctactagtaaaattcaattctaattagtaacttgt |
42624313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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