View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_2 (Length: 502)
Name: NF12172_high_2
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 28 - 487
Target Start/End: Complemental strand, 26936 - 26477
Alignment:
| Q |
28 |
atatctaccttagacaccaattaagatcaaatttagtttatgcttgagnnnnnnnagcagttaactgaagtttcttagttacatcgtatacctaatagct |
127 |
Q |
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| T |
26936 |
atatctaccttagacaccaattaagatcaaatttagtttatgcttgagtttttttagcagttaactgaagtttcttagttacatcgtataactaatagct |
26837 |
T |
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| Q |
128 |
aattatttatattatgcactatgtttaccttgttgaatgcaattcttcagtttgttttcagnnnnnnngcaaattgattcttcaaaattcagttcaagat |
227 |
Q |
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| T |
26836 |
aattatttatattatgcactatgtttactttgttgaatgcaattcttcagtttgttttcagaaaaaaagcaaattgattcttcaaaattcagttcaagat |
26737 |
T |
|
| Q |
228 |
accgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatgcatgtgaattagtcagtggagaggagctttcattagagg |
327 |
Q |
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| T |
26736 |
actgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatgcatgtgaattagtcagtggagaggagctttcgttagagg |
26637 |
T |
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| Q |
328 |
atggcgatgataatgttcatgcttatcttttcaaggcagtaaaaaataacaatggaattggcctattgcttctttctgatgtttatgggtttgaggactc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26636 |
atggcgatgataatgttcatgcttatcttttcaaggcagtaaaaaataacaatggaattggcctattgcttctttctgatgtttatgggtttgaggactc |
26537 |
T |
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| Q |
428 |
ctccacaagagattttgcatatcgagtagcttgcaatggtttcaagtacgtatccatacc |
487 |
Q |
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| T |
26536 |
ctccacaagagattttgcatatcgagtagcttgcaatggtttcaagtacgtatccatacc |
26477 |
T |
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