View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12172_high_3 (Length: 443)
Name: NF12172_high_3
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_3 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 1963319 - 1962905
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1963319 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattag |
1963220 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1963219 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccctt |
1963120 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963119 |
ttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
1963020 |
T |
|
| Q |
301 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963019 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
1962920 |
T |
|
| Q |
401 |
tgagcaaatggaagt |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1962919 |
tgagcaaatggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2015110 - 2015524
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2015110 |
atttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttattag |
2015209 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
2015210 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgtt |
2015309 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| |||||||||||| |
|
|
| T |
2015310 |
ttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttga |
2015409 |
T |
|
| Q |
301 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
400 |
Q |
| |
|
||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
2015410 |
gctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaact |
2015509 |
T |
|
| Q |
401 |
tgagcaaatggaagt |
415 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2015510 |
tgagcaaatagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2018493 - 2018907
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||| |||| |
|
|
| T |
2018493 |
atttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccattat |
2018592 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
|||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| || |
|
|
| T |
2018593 |
catcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggaccttt |
2018692 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
2018693 |
ttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttga |
2018792 |
T |
|
| Q |
301 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
400 |
Q |
| |
|
||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| ||||| |
|
|
| T |
2018793 |
gcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaact |
2018892 |
T |
|
| Q |
401 |
tgagcaaatggaagt |
415 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2018893 |
tgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 2011711 - 2012124
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || ||||| |
|
|
| T |
2011711 |
atttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattag |
2011810 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
|||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| | |
|
|
| T |
2011811 |
catcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccat |
2011910 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| ||||||||||||||||||| |
|
|
| T |
2011911 |
ttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttga |
2012010 |
T |
|
| Q |
301 |
gcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
399 |
Q |
| |
|
||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
2012011 |
actatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaac |
2012109 |
T |
|
| Q |
400 |
ttgagcaaatggaag |
414 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
2012110 |
ttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 2008108 - 2008509
Alignment:
| Q |
13 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccag |
112 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| |||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
2008108 |
gaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccattagcatcatcaccag |
2008207 |
T |
|
| Q |
113 |
atgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccag |
212 |
Q |
| |
|
|| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| | || ||||| || |
|
|
| T |
2008208 |
attttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatctctatttctag |
2008307 |
T |
|
| Q |
213 |
gaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagcta-ggtcaag |
311 |
Q |
| |
|
||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
2008308 |
gaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttgagctatgctcaag |
2008407 |
T |
|
| Q |
312 |
aaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatgg |
411 |
Q |
| |
|
||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| ||| |||||| | |
|
|
| T |
2008408 |
-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagcttaggcaaatag |
2008506 |
T |
|
| Q |
412 |
aag |
414 |
Q |
| |
|
||| |
|
|
| T |
2008507 |
aag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 2433139 - 2432951
Alignment:
| Q |
70 |
tccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc |
169 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
2433139 |
tccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttc |
2433040 |
T |
|
| Q |
170 |
cttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
258 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433039 |
cttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 1968919 - 1968523
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
|||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||||| |||||||| ||||||||| || ||||| |
|
|
| T |
1968919 |
atttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattag |
1968820 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| | |
|
|
| T |
1968819 |
catcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccat |
1968720 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
|| | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
1968719 |
ctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttga |
1968620 |
T |
|
| Q |
301 |
gcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
397 |
Q |
| |
|
|||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968619 |
gctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2004716 - 2004952
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||| ||||||||| | ||||| || ||| || | |
|
|
| T |
2004716 |
atttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatgat |
2004815 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
| ||||||| || || || || |||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | |
|
|
| T |
2004816 |
tagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccat |
2004915 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatca |
237 |
Q |
| |
|
|| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2004916 |
ctccatttctaggaagctattaacaagaacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1964983 - 1964747
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
|||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || ||||| |
|
|
| T |
1964983 |
atttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattag |
1964884 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
||||| |||| ||||| ||| | ||| ||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| | |
|
|
| T |
1964883 |
catcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccat |
1964784 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatca |
237 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
1964783 |
ttccatttctaagaagctattaacaagaacaccatca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 414
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
274 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
372 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
373 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
414 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 5902492 - 5902084
Alignment:
| Q |
1 |
atttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattag |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| | || |
|
|
| T |
5902492 |
atttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca------tac |
5902399 |
T |
|
| Q |
101 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
200 |
Q |
| |
|
||| || ||||||| |||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| || |
|
|
| T |
5902398 |
cattattaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggaccttt |
5902299 |
T |
|
| Q |
201 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
300 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || |||||||||||| |
|
|
| T |
5902298 |
ttcaatttccaggaagctattaataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttga |
5902199 |
T |
|
| Q |
301 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
400 |
Q |
| |
|
||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
5902198 |
gcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatt |
5902099 |
T |
|
| Q |
401 |
tgagcaaatggaagt |
415 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
5902098 |
tgagcaaatagaagt |
5902084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5905975 - 5905888
Alignment:
| Q |
2 |
tttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc |
89 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| | ||||| || |||||| ||| |||||| |
|
|
| T |
5905975 |
tttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactc |
5905888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 22096 - 22055
Alignment:
| Q |
13 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
54 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22096 |
gaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 2842 - 2805
Alignment:
| Q |
13 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
50 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2842 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 57385 - 57348
Alignment:
| Q |
13 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
50 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
57385 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 15459 - 15496
Alignment:
| Q |
13 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
50 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15459 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
353 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
414 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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