View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_5 (Length: 425)
Name: NF12172_high_5
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 35696302 - 35696678
Alignment:
| Q |
22 |
tcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagc |
121 |
Q |
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| T |
35696302 |
tcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagc |
35696401 |
T |
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| Q |
122 |
ctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgc |
221 |
Q |
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| T |
35696402 |
ctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgc |
35696501 |
T |
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| Q |
222 |
gtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttc |
321 |
Q |
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| T |
35696502 |
gtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttc |
35696601 |
T |
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| Q |
322 |
atctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggt |
398 |
Q |
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| T |
35696602 |
atctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggt |
35696678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
198 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
297 |
Q |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
298 |
ttctcattggaac |
310 |
Q |
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||||||||||||| |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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