View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_6 (Length: 373)
Name: NF12172_high_6
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 8801491 - 8801160
Alignment:
| Q |
29 |
agcatctagtggacgtgccctcctacaagctaagaaacgtaattaacatttttgttatgaatgtgtctcttttgattttacttctagttttatcttttat |
128 |
Q |
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| T |
8801491 |
agcatctagtggacgtgcccttctacaagctaagaaacgtaattaacatttttgttatgaatgtgtctcttttgattttacttctagttttatcttttat |
8801392 |
T |
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| Q |
129 |
aggtcaccatgacattatttatggtcttcattcatcttcaatttatttatgtttttcattcatcttcaatatgggtttgctttgaattaaaattaagaaa |
228 |
Q |
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| T |
8801391 |
aggtcaccatgacattatttatggtcttcattcatcttcaatttatttatggttttcattcatcttcaatatgggtttgctttgaattaaaattaagaaa |
8801292 |
T |
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| Q |
229 |
tcataatgtaacaaggtaccttaaatgatgttggttccattgatgataacttg-nnnnnnnnnnnnnnnnnggtttgattaaaatatgatcatctaattt |
327 |
Q |
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| T |
8801291 |
tcataatgtaacaaggtaccttaaatgatgttggttccattgatgataacttgttttttttttttttttttggtttgattaaaatatgatcatctaattt |
8801192 |
T |
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| Q |
328 |
cattagcaatataatcataaacttggtatttt |
359 |
Q |
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| T |
8801191 |
cattagcaatataatcataaacttggtatttt |
8801160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 7094803 - 7095111
Alignment:
| Q |
29 |
agcatctagtggacgtgccctcctacaagctaagaaacgtaattaacatttttgttatgaatgtgtctcttttgattttacttctagttttatcttttat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7094803 |
agcatctagtggacgtgccctcctacaagctaagaaacgtaattaacatttttgttatgaatgtgtctcttttgattttacttctagttttatcttatat |
7094902 |
T |
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| Q |
129 |
aggtcaccatgacattatttatggtcttcattcatcttcaatttatttatgtttttcattcatcttcaatatgggtttgctttgaattaaaattaagaaa |
228 |
Q |
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| T |
7094903 |
aggtca---------------tggtcttcattcatcttcaatttatttatggttttcattcatcttcaatatgggtttgctttgaattaaaattaagaaa |
7094987 |
T |
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| Q |
229 |
tcataatgtaacaaggtaccttaaatgatgttggttccattgatgataacttgnnnnnnnnnnnnnnnnnggtttgattaaaatatgatcatctaatttc |
328 |
Q |
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| T |
7094988 |
tcataatgtaacaaggtaccttaaatgatgttggttccattgatgataaattgttttttttttt-------gtttgattaaaatatgatcatctaatttc |
7095080 |
T |
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| Q |
329 |
attagcaatataatcataaacttggtatttt |
359 |
Q |
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| T |
7095081 |
attagcaatataatcataaacttggtatttt |
7095111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 3014646 - 3014701
Alignment:
| Q |
299 |
ggtttgattaaaatatgatcatctaatttcattagcaatataatcataaacttggt |
354 |
Q |
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| T |
3014646 |
ggtttgactaaaatatgaacatctaatttcattagcaatataatcataaacttggt |
3014701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 3014267 - 3014318
Alignment:
| Q |
29 |
agcatctagtggacgtgccctcctacaagctaagaaacgtaattaacatttt |
80 |
Q |
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|||||||||||| ||| ||||||||||||||| |||| |||||||||||||| |
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| T |
3014267 |
agcatctagtggccgttccctcctacaagctaggaaaggtaattaacatttt |
3014318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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