View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_7 (Length: 354)
Name: NF12172_high_7
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 38575307 - 38574970
Alignment:
| Q |
18 |
aacaaaagctacatgttaaacttcaacaaaatcaccgtgtcacaaaaatttcgccataacataa-tacgaatttgctagagacacaaatgaatgagtatg |
116 |
Q |
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| T |
38575307 |
aacaaaagctacatgttaaacttcaacaaaatcaccgtgtcacaaaaatttcgccataacataaatacgaatttgcaagagacacaaatgaatgagtatg |
38575208 |
T |
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| Q |
117 |
tgatgtaatgtgatgactcataagtttccaatattagagtgataattgaatgattgacctgatagaagtaaagtctacttgctaggccaccaacatcaag |
216 |
Q |
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| T |
38575207 |
tgatgtaatgtgatgactcataagtttccaatattagagtgataattgaatgattgacctgatagaagtaaagtctacttgctaggccaccaacatcaag |
38575108 |
T |
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| Q |
217 |
ttcccaagtccttgcatcaccaacccaaccatcacctttattaatgggataaccatactcaccccaaataggatgaggcaataactgaactatctcttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38575107 |
ttcccaagtccttgcatcaccaacccaaccatcacctttattaatgggataaccatactcaccccaaataggatgaggcaataactgaactatctcttgt |
38575008 |
T |
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| Q |
317 |
gcttgaggattactataaggatcacaagtactaacagg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38575007 |
gcttgaggattactataaggatcacaagtactaacagg |
38574970 |
T |
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