View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12172_high_9 (Length: 338)
Name: NF12172_high_9
Description: NF12172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12172_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 51876211 - 51876412
Alignment:
| Q |
125 |
agagaataagaaaaaagttgaatgagcaagaagtttgtagtacaaaaattaagctatgaagtatggtgttgtcgtttttatcattctgtccggcccataa |
224 |
Q |
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| T |
51876211 |
agagaataagaaaaaagttgaatgagcaagaagtttgtagtacaaaaattaagctatgaagtatggtgttgtcgtttttatcattctgtccgggccataa |
51876310 |
T |
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| Q |
225 |
ttctactgaaaaacactttaattcttccaatgttgaactctcatggattgtacgggccatgatttttcttgtgcatctaagcctcacactacatactata |
324 |
Q |
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| T |
51876311 |
ttctactgaaaaacactttaattcttccaatgttgaactctcatggattgtacgggccatgatttttcttgtgcatctaagcctcacactacatactata |
51876410 |
T |
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| Q |
325 |
tt |
326 |
Q |
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|| |
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| T |
51876411 |
tt |
51876412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 51876056 - 51876171
Alignment:
| Q |
2 |
atgagaaccgctatccatcaaaactcaagccacctaagaattttcttaaaattaagtgtactatgtgtttagactttgataaatcaattccaaaatacag |
101 |
Q |
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| T |
51876056 |
atgagaaccgctatccatcaaaactcaagccacctaagaattttcttaaaattaagtgtaatatgtgtttagactttgataaatcaattcaaaaatacag |
51876155 |
T |
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| Q |
102 |
aatcaactactccctc |
117 |
Q |
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| T |
51876156 |
aatcaactactccctc |
51876171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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