View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_high_17 (Length: 236)
Name: NF12173_high_17
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 18681485 - 18681282
Alignment:
| Q |
18 |
acatattgcatggtttattgtaatatgagctatttgcaaaatttaatcatttaacaatttgacaatgttggtgaaggtatttgaagatgaaaacgaggca |
117 |
Q |
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| T |
18681485 |
acatattgcatggtttattgtaatatgagctatttgcaaaatttaatcatttaacaatttgacaatgttggtgaaggtatttgaagatgaaaacgaggca |
18681386 |
T |
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| Q |
118 |
gccaagtattgtgacttgctgcaaggaggttgtgagggtgttgccgagatagacgcctcatcggtacaaataaccaagcaattataatttgcctctagtc |
217 |
Q |
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| T |
18681385 |
gccaagtattgtgacttgctgcaaggaggttgtgagggtgttgccgagatagacgcctcatcggtacaaataaccaagcaattataatttgcctttaatc |
18681286 |
T |
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| Q |
218 |
tctg |
221 |
Q |
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|||| |
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| T |
18681285 |
tctg |
18681282 |
T |
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