View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_high_7 (Length: 386)
Name: NF12173_high_7
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 45169301 - 45169656
Alignment:
| Q |
16 |
acatagcatagacatggagggaacaactctctgaagtgagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagc |
115 |
Q |
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| T |
45169301 |
acatagcatagacatggagggaacaactctctgaagtgagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagc |
45169400 |
T |
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| Q |
116 |
catggtccatgcatgaatgccatggcttatcccagttgactgtcaatatgtctttttcaatccgtgtgcaaatgcatattatgaattcttactgttaata |
215 |
Q |
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| T |
45169401 |
catggtccatgcatgaatgccatggcttatcccagttgactgtcaatatgtctttttcaatccgtgtgcaaatg-atattatgaattcttactgttaata |
45169499 |
T |
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| Q |
216 |
cgctacactggcaaaattcattattaagttcttctgtaagctaaacaaattgatccgtgaaagg-----ttatttgtacacaataattcaccccatggct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45169500 |
cgctacactggcaaaattcattattaagttcttctgtaagctaaacaaattgatccgtgaaaggttattttatttgtacacaataattcaccccatggct |
45169599 |
T |
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| Q |
311 |
tgtcnnnnnnnactttgtttttaatataagcaaaagtttgttaattggagatatata |
367 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
45169600 |
tgtctttttttactttgtttttaatataagcaaaaggttgttaattagagatatata |
45169656 |
T |
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