View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_1 (Length: 687)
Name: NF12173_low_1
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 22 - 678
Target Start/End: Original strand, 44695242 - 44695891
Alignment:
| Q |
22 |
tgaacatgatggacactgatgttggctgtttgatagcaactaccaattcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttttgaaga |
121 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44695242 |
tgaacatgatggacactgatgttggctgtttgatggcaactaccaattcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttttgcaga |
44695341 |
T |
|
| Q |
122 |
tgatttaaactcaacaagttcttcaccctgtgaatggttcatatgcgatgacaatcatagttctacgagatattttgttattcaggtgtggaaaattaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695342 |
tgatttaaactcaacaagttcttcaccctgtgaatggttcatatgcgatgacgatcgtagttctacgagatattttgttattcaggtgtggaaaattaaa |
44695441 |
T |
|
| Q |
222 |
aggggatatcctattatcttgcaatataacacatatttatttctttctttcaaccgtgttattattcacataacatattagtaagttagcattaaaaatg |
321 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695442 |
aggggatatcctattatcttgcaatt---cacatatttatttctttc----aaccgtgttattattcacataacatattagtaagttagcattaaaaatg |
44695534 |
T |
|
| Q |
322 |
attgcaaatttggannnnnnnnnagtatgctatccaaccaattattgttttgatatgcagggttcagagtcatttgaatcctggcaggcaaacctacttt |
421 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695535 |
attgcaaatttggatttttttttagtatgctatccaaccaattattgttttgatatgcagggttcagagtcatttgaatcctggcaggcaaacctacttt |
44695634 |
T |
|
| Q |
422 |
ttgagccagttcaatttgaggtaattgttaccaatgcaggaaaagtacttttttcagatttgattcctcttgttaacaggatgaattttattctgtttca |
521 |
Q |
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| T |
44695635 |
ttgagccagttcaatttgaggtaattgttaccattgcaggaaaagtacttttttcagatttgattcctcttgttaacgggatgaattttattctgtttca |
44695734 |
T |
|
| Q |
522 |
aataaaaaataatttcggatttttgtgaatgtgtttatactttgtaaaattgggacaatgagatacaatttttctccttaggggttagatgtccttgtcc |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
44695735 |
aataaaaaataatttcggatttttgtgaatgtgtttatactttgtaaaattgggacaatgagatacgatttttctcctcaggggttagatgtccttgtcc |
44695834 |
T |
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| Q |
622 |
atagaggtatatatgaggctgctaaagggacatatcagcagatgttaccacaggttc |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44695835 |
atagaggtatatatgaggctgctaaagggacatatcagcagatgttaccagaggttc |
44695891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 39146597 - 39146439
Alignment:
| Q |
50 |
tttgatagcaactaccaattcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttttgaagatgatttaaactcaacaagttcttcaccc |
149 |
Q |
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|||||| || ||||| ||||| |||||||||| ||||| ||||| |||||||||||||| || ||| ||||||| |||||||||| ||| ||||| |
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| T |
39146597 |
tttgatggcgactactgattcagtgacagcagtggttgcggcaaaggaggaagtaaaacaggctgttgcagatgatctaaactcaactcattcatcacct |
39146498 |
T |
|
| Q |
150 |
tgtgaatggttcatatgcgatgacaatcatagttctacgagatattttgttattcaggt |
208 |
Q |
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|||||||||||||| || ||||| || || ||| ||| |||| ||||||||||||||| |
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| T |
39146497 |
tgtgaatggttcatctgtgatgataaccagagtggtacaagattttttgttattcaggt |
39146439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 39146338 - 39146265
Alignment:
| Q |
375 |
tatgcagggttcagagtcatttgaatcctggcaggcaaacctactttttgagccagttcaatttgaggtaattg |
448 |
Q |
| |
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|||| ||||||| |||||||| | ||| ||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
39146338 |
tatgtagggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaattg |
39146265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 667
Target Start/End: Complemental strand, 39146094 - 39146036
Alignment:
| Q |
609 |
gatgtccttgtccatagaggtatatatgaggctgctaaagggacatatcagcagatgtt |
667 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
39146094 |
gatgtccttgtgcacagaggtatatatgaggctgctaaagggatatatctacagatgtt |
39146036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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