View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_10 (Length: 373)
Name: NF12173_low_10
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 8323609 - 8323957
Alignment:
| Q |
18 |
ttatcaacttgttccggtgaaagtcgcaacaatgttgctgaagttttcttcnnnnnnncttcacttgtgtcttttcttcctagaatgagtggtagtggct |
117 |
Q |
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| T |
8323609 |
ttatcaacttgttccggcgaaagtcgcaacaatgttgctgaagttttcttctttttttcttcacttgtgtcttttcttcctagaatgagtggtagtggct |
8323708 |
T |
|
| Q |
118 |
tcaactccttgtgttcaaaccgtaccaatggcgtgtgtgagaatttgagtattgttctatctaaaaagggtaactcatttacctcaagggtttctcctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8323709 |
tcaactccttgtgttcaaaccgtaccaatggcgtgtgtgagaatttgagtattgttctatctaaaaagggtaactcatttacctcaagggtttctcctct |
8323808 |
T |
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| Q |
218 |
tgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagaccttcatgtttgttt |
317 |
Q |
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| T |
8323809 |
tgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagaccttcatctttgttt |
8323908 |
T |
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| Q |
318 |
tgaaatcttgtgagttgaaccacaaacaatggaatatcttccacaggtt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8323909 |
tgaaatcttgtgagttgaaccacaaacaatggaatatcttccactggtt |
8323957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 300
Target Start/End: Original strand, 18317537 - 18317748
Alignment:
| Q |
92 |
tcttcctagaatgagtggtagtggcttcaactccttgtgttcaaaccgtac--caat-ggcgtgtgtgagaatttgagtattgttctatctaaaaagggt |
188 |
Q |
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| T |
18317537 |
tcttcctagaatgagtggtagtggcttcaactctacgtgttcgaaacgtggttcaataggggtgtttgagaatttcagtattgttctatctaaataaggt |
18317636 |
T |
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| Q |
189 |
aactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaa |
288 |
Q |
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|| ||||| |||| || |||| |||||||||||||| |||||||||||||| | || | |||| |||||||||||||||||||| ||||||| |
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| T |
18317637 |
aattcattagcctctagtctttcacctcttgctattttagcccatgagttgataaaattactacaaccaacaccatctgataaagggtgagagtaagcaa |
18317736 |
T |
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| Q |
289 |
taccaattgcaa |
300 |
Q |
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| T |
18317737 |
ttccaatagcaa |
18317748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 18273014 - 18272863
Alignment:
| Q |
207 |
gtttctcctcttgctattttggcccatgagttgatga-gtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagacct |
305 |
Q |
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||||| |||||||| |||||||||||||||||||| | ||| ||| |||| |||||||||||| | |||||||||||||| |||||||||| | | |
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| T |
18273014 |
gtttcacctcttgcaattttggcccatgagttgataaagtc-aatacaaccaacaccatctgataaaagatgagaataagcaattccaattgcaaagctt |
18272916 |
T |
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| Q |
306 |
tcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttc |
358 |
Q |
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|||| |||||| ||||||||||||||||||| ||||||||||| || ||||| |
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| T |
18272915 |
tcatcattgtttcgaaatcttgtgagttgaacaacaaacaatggcatttcttc |
18272863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 18315336 - 18315252
Alignment:
| Q |
92 |
tcttcctagaatgagtggtagtggcttcaactccttgtgttcaaacc---gtaccaatggcgtgtgtgagaatttgagtattgtt |
173 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||||||| | || | | ||| |||||||||||||||||||||||| |
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| T |
18315336 |
tcttcctataatgaatggtagtggcttcaactccatgtgttcaaaacgtggttcaattggggtgtgtgagaatttgagtattgtt |
18315252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 19995817 - 19996169
Alignment:
| Q |
18 |
ttatcaacttgttccggtgaaagtcgcaacaatgttgctgaagttttcttcnnnnnnncttcacttgtgtcttttcttcctagaatgagtggtagtggct |
117 |
Q |
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||||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19995817 |
ttatcaacttgttccggtgaaagcctcaataatgttgatgaagttttcttctttttttcttcacttgtgtcggttcttcctagaatgagtggtagtggct |
19995916 |
T |
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| Q |
118 |
tcaactccttgtgttcaaaccgta---ccaatggcg-tgtgtgagaatttgagtattgttctatctaaaaagggtaactcatttacctcaagggtttctc |
213 |
Q |
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|||||||| |||||||||| ||| || |||| | |||||||||||||||| |||||| | || ||||| ||||||||||| ||||| | ||||| | |
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| T |
19995917 |
tcaactccatgtgttcaaaacgtggttccgatgggggtgtgtgagaatttgagcattgttatgtccaaaaatggtaactcattagcctcatgtgtttcac |
19996016 |
T |
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| Q |
214 |
ctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagaccttcatgttt |
313 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||| ||||| ||| |
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| T |
19996017 |
ctcttgctattttggcccatgtgttgatgaatctaatggctcctagtccatctgataaagagtgagatcaagcaatactaattgcaagatgttcatcttt |
19996116 |
T |
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| Q |
314 |
gttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccacaggtt |
366 |
Q |
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|||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19996117 |
gttttggaattttgtgagttgaaccagaaacaatggaatatcttccacaggtt |
19996169 |
T |
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