View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_12 (Length: 340)
Name: NF12173_low_12
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 325
Target Start/End: Complemental strand, 35035440 - 35035139
Alignment:
| Q |
24 |
cattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgct |
123 |
Q |
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| T |
35035440 |
cattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgct |
35035341 |
T |
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| Q |
124 |
tgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctcta |
223 |
Q |
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| T |
35035340 |
tgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctcta |
35035241 |
T |
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| Q |
224 |
tttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccac |
323 |
Q |
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| T |
35035240 |
tttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccac |
35035141 |
T |
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| Q |
324 |
ag |
325 |
Q |
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|| |
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| T |
35035140 |
ag |
35035139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 325
Target Start/End: Complemental strand, 34974660 - 34974415
Alignment:
| Q |
77 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
176 |
Q |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
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| Q |
177 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
276 |
Q |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa-- |
34974463 |
T |
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| Q |
277 |
tcacctaaaaacttagatttgttcttcacatccgtttcagccaccacag |
325 |
Q |
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| T |
34974462 |
-cacctaaaaatttagatttgttcttcacatccatttcagccaccacag |
34974415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 34956119 - 34955953
Alignment:
| Q |
156 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
255 |
Q |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
34956020 |
T |
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| Q |
256 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccacag |
325 |
Q |
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| T |
34956019 |
ctaaaacccttaggtcaaa---cacaaaaaaatttagatttgttcttcacatccgtttcatccaccacag |
34955953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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