View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_13 (Length: 319)
Name: NF12173_low_13
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 42637753 - 42638039
Alignment:
| Q |
16 |
gaatcaacttatagttatttctaatatggtcataaccaaacccatgaagatgaagataattcaaggaaggttgagaagcaaaaggacttgaaggaatgat |
115 |
Q |
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| T |
42637753 |
gaatcaacttatagttatttctaatatggtcataaccaaacccatgaagatgaagataattcaaggaaggttgagaagcaaaaggacttgaaggaatgat |
42637852 |
T |
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| Q |
116 |
tttgatttccttggtagctggattccacaatacaactcttccttgagagttataatcaatacaaataatgccattgacactagtataaccacaaatttta |
215 |
Q |
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| T |
42637853 |
tttgttttccttggtagctagattccacaatacaactcttccttgagagttataatcaatacaaataatgccattgacactagtataaccacaaatttta |
42637952 |
T |
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| Q |
216 |
aaatgaattcgatcatcgggaaatagatttggccaatctaattcaaccctattctcaaatctctctccagaaagagaaaacaatccc |
302 |
Q |
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| T |
42637953 |
aaatgaattcgatcatcggaaaatagatttggccaatctaattcaaccctattctcaaatctctctccagaaagagaaaacaatccc |
42638039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 42411238 - 42411176
Alignment:
| Q |
236 |
aaatagatttggccaatctaattcaaccctattctcaaatctctctccagaaagagaaaacaa |
298 |
Q |
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| T |
42411238 |
aaatggatttggccaatctaatttgactcttttctcaaatctctctccggaaacagaatacaa |
42411176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 42565554 - 42565612
Alignment:
| Q |
94 |
caaaaggacttgaaggaatgattttgatttccttggtagctggattccacaatacaact |
152 |
Q |
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| T |
42565554 |
caaaagggcttggaggaatggcattgaattccttggtagttggattccacaatacaact |
42565612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 9575963 - 9576024
Alignment:
| Q |
93 |
gcaaaaggacttgaaggaatgattttgatttccttggtagctggattccacaatacaactct |
154 |
Q |
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| T |
9575963 |
gcaaaaggactaggaggagtgactttgaattgattggtagctgggttccacaatacaactct |
9576024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 44938296 - 44938324
Alignment:
| Q |
37 |
taatatggtcataaccaaacccatgaaga |
65 |
Q |
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| T |
44938296 |
taatatggtcataaccaaacccatgaaga |
44938324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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