View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_15 (Length: 299)
Name: NF12173_low_15
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 12754953 - 12755216
Alignment:
| Q |
6 |
cagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgt |
105 |
Q |
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| T |
12754953 |
cagatcaaaagtgtgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgt |
12755052 |
T |
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| Q |
106 |
gt---gtatcggacatgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctg |
202 |
Q |
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| T |
12755053 |
gtctggtatcggacatgtgtcattcaacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaagtatctg |
12755152 |
T |
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| Q |
203 |
acacatgtaagagtctattaatcagtgtctacatgtcagtgtcgtgttagtgcttcgtagcatact |
268 |
Q |
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| T |
12755153 |
acacatgta--agtctattaatcagtgcctacatgtcagtgtcgtgttagtgcttcgtagcatact |
12755216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 12817914 - 12818152
Alignment:
| Q |
6 |
cagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgt |
105 |
Q |
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| T |
12817914 |
cagatcaaaagtgtgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgt |
12818013 |
T |
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| Q |
106 |
gt---gtatcggacatgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctg |
202 |
Q |
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| T |
12818014 |
gtctggtatcggacatgtgtcattcaacaacattaacacaatactaacacaaaacttatgtagcatacacaattcagatcaattgtatgtcaagtatctg |
12818113 |
T |
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| Q |
203 |
acacatgtaagagtctattaatcagtgtctacatgtcagtg |
243 |
Q |
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| T |
12818114 |
acacatgta--agtctattaatcagtgcctacatgtcagtg |
12818152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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