View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_16 (Length: 292)
Name: NF12173_low_16
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 36705370 - 36705101
Alignment:
| Q |
19 |
gagatcaactgcattacttagtccaattgctcatatgaatctagttcctccagggataacaaaagttgctgctgacctctttttagctaatgtgagtgat |
118 |
Q |
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| T |
36705370 |
gagatcagctgcattacttagtccaattgctcatatgaatctagttcctccagggataacaaaagttgctgctgacctctttttagctaatgtgagtgat |
36705271 |
T |
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| Q |
119 |
agaataaaaaacactatttag---ataaactatgtata----taattattaattgattacaattatgaaaatgttttccttttg-----ttttttctaat |
206 |
Q |
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| T |
36705270 |
agaataaaaaacactatttagataataaactatgtatataattaattattaattgattacaattatgaaaatgttttccttttgcttttttttttttaat |
36705171 |
T |
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| Q |
207 |
atatcaggaagtatattggttaggccttcgtgaattcattcctaatgcgtaagagaataaataacccttt |
276 |
Q |
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| T |
36705170 |
atatcaggaagtatattggttaggccttcgtgaattcattcctaatgcgtaagagaataaataacccttt |
36705101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 36712909 - 36712661
Alignment:
| Q |
27 |
ctgcattacttagtccaattgctcatatgaatctagttcctccagggataacaaaagttgctgctgacctctttttagctaatgtgagtgatagaataa- |
125 |
Q |
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| T |
36712909 |
ctgcattacttagtccaattgctcatatgactcaaattccttccgagttaacaaaaattgctgctcaactctttttagctaatgtgagtgaaagaaaaac |
36712810 |
T |
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| Q |
126 |
aaaacactatttagat-aaactatgtata-----taattattaattgattacaattatgaaaatgttttccttttgttttttctaatatatcaggaagta |
219 |
Q |
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| T |
36712809 |
aaattattatttagataaaattatgtataatattaaattaccaattgaat-taactattaaaatatttccc-----ttttttctaatgtaacaggatata |
36712716 |
T |
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| Q |
220 |
tattggttaggccttcgtgaattcattcctaatgcgtaagagaataaataaccct |
274 |
Q |
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| T |
36712715 |
tattggttaggtctccgtgaattcgttccacatgcgtaagagaataaataaccct |
36712661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 36663867 - 36663946
Alignment:
| Q |
197 |
tttttctaatatatcaggaagtatattggttaggccttcgtgaattcattcctaatgcgtaagagaataaataacccttt |
276 |
Q |
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| T |
36663867 |
tttttttaatataataggaagtatattggtcaagcctttatcagttcattcctaacgtgtaagagaataaataacccttt |
36663946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 30904591 - 30904681
Alignment:
| Q |
21 |
gatcaactgcattacttagtccaattgctcatatgaatctagttcctccagggataacaaaagttgctgctgacctctttttagctaatgt |
111 |
Q |
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| T |
30904591 |
gatcaactgcattacttagtccaattgctcatatgaatctaattccttcaaaatttacaaagcttgctgctgacctatttttagctgatgt |
30904681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 30904802 - 30904859
Alignment:
| Q |
219 |
atattggttaggccttcgtgaattcattcctaatgcgtaagagaataaataacccttt |
276 |
Q |
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| T |
30904802 |
atattggttaggcctccgtgaattccttcctaatgtgtaagagaataaataacccttt |
30904859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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