View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_17 (Length: 290)
Name: NF12173_low_17
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 15811586 - 15811321
Alignment:
| Q |
14 |
cagagaacatgtctagaggtctatacatacaaacatcaa-------gcgtgagaaaaacacagtccaaagctaaaaccgcacagatacatgagaagtagg |
106 |
Q |
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| T |
15811586 |
cagagagcatgtctagaggtctatacatacaaacatcaaacatcaagcgtgagaaaaacacagtccaaagctaaaaccgcacagaaacatgagaagtagg |
15811487 |
T |
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| Q |
107 |
atttgatttgtcaaatggcatatcataaaacagattcatatctaacaacaatgaaattctgagtgtctaaatccaaagctttactttccaaggggtcact |
206 |
Q |
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| T |
15811486 |
atttgatttgtcaaatggcatatcataaaacagattcatatctaacaacaatgaaattctgagtgtctaaatccaaagctttactttccaaggggtcact |
15811387 |
T |
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| Q |
207 |
gataagacattctcattacgcataacaaaatccaaacaagatcggtgaattagtcatatgtcgttt |
272 |
Q |
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| T |
15811386 |
gataagacattctcattacgcataacaaactccaaacaagatcggtgaattagtcatatgtcgttt |
15811321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 15797862 - 15797807
Alignment:
| Q |
60 |
aaaaacacagtccaaagctaaaaccgcacagatacatgagaagtaggatttgattt |
115 |
Q |
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| T |
15797862 |
aaaaacaccgtccaaagctaaaaccacccataaacatgagaagtacgatttgattt |
15797807 |
T |
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