View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12173_low_18 (Length: 289)
Name: NF12173_low_18
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 4819854 - 4820106
Alignment:
| Q |
14 |
agagaagggtaacaaagggaaagatcatatagagtgagatgttcatttgtgtagtaaagacttaagagaagggtaacttgtcacacatcggaagtttgag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4819854 |
agagaagggtaacaaagggaaagatcatatagagtgagatgttcatttgtgtagtaaagacttaagagaagggtaacttgtcacacatcggaagtttgag |
4819953 |
T |
|
| Q |
114 |
aagcttagagatataactaccattataaataaagcttagacaaactttctttggtagaggtgatgtttggtggaattgtggaaagatgctttcgtttatg |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4819954 |
aagcttagagagataactaccattataaataaagcttagacaaactttctttggtagaggtgatgtttg--------gtggaaagatgctttcgtttatg |
4820045 |
T |
|
| Q |
214 |
gaggaaggcttcctccatagtcacaataac-aagtattttggcagattatttggatgcata |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
4820046 |
gaggaaggcttcctccatagtcacaataacaaagtgttttggcacattatttggatgcata |
4820106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 4798621 - 4798682
Alignment:
| Q |
91 |
ttgtcacacatcggaagtttgagaagcttagagatat-aactaccattataaataaagctta |
151 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
4798621 |
ttgtcccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaagctta |
4798682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 4803546 - 4803596
Alignment:
| Q |
97 |
cacatcggaagtttgagaagcttagagatat-aactaccattataaataaa |
146 |
Q |
| |
|
||||| ||| ||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
4803546 |
cacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
4803596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 4817779 - 4817837
Alignment:
| Q |
91 |
ttgtcacacatcggaagtttgagaagcttagagatat-aactaccattataaataaagc |
148 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||||| | |||||| |||||||||||||| |
|
|
| T |
4817779 |
ttgtcccacatcgaaagtttgagaaacttagagatgtaaactactattataaataaagc |
4817837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University