View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_23 (Length: 217)
Name: NF12173_low_23
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_23 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 8800 - 8970
Alignment:
| Q |
32 |
tacagcagcctccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
131 |
Q |
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| T |
8800 |
tacagccgcctctgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
8899 |
T |
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| Q |
132 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagttt |
202 |
Q |
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| T |
8900 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagttt |
8970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8435 - 8469
Alignment:
| Q |
1 |
gtgaataaaacaaaatgttaaaacttaaaaataca |
35 |
Q |
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| T |
8435 |
gtgaataaaacaaaatgttaaaacttaaaaataca |
8469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 17020459 - 17020300
Alignment:
| Q |
42 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
141 |
Q |
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| T |
17020459 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17020360 |
T |
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| Q |
142 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagttt |
202 |
Q |
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| T |
17020359 |
ttggggttcag-taaacctctttagtttggtcttgttccatataatgatcggacaaagttt |
17020300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 17550896 - 17550737
Alignment:
| Q |
42 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
141 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
17550896 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17550797 |
T |
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| Q |
142 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagttt |
202 |
Q |
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| T |
17550796 |
ttggggttcag-taaacctctttagtttggtcttgttccatataatgatcggacaaagttt |
17550737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 52133655 - 52133760
Alignment:
| Q |
97 |
tttgcgggaagaaggcctgcaatttcagttgaatagataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggaca |
196 |
Q |
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||||||||||||| ||| |||||| ||| ||| ||| ||||||| | ||||||| | |||| |||||||| | |||||||||||||||||| |||| |
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| T |
52133655 |
tttgcgggaagaaagccagcaattccagcagaagagacaggagctattgggttcaagagttcctccttagtttggttttgttccatataattatcagaca |
52133754 |
T |
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| Q |
197 |
aagttt |
202 |
Q |
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||||| |
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| T |
52133755 |
gagttt |
52133760 |
T |
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