View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12173_low_24 (Length: 209)

Name: NF12173_low_24
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12173_low_24
NF12173_low_24
[»] chr3 (5 HSPs)
chr3 (103-200)||(2940664-2940761)
chr3 (103-198)||(2945603-2945698)
chr3 (116-200)||(2941237-2941321)
chr3 (116-190)||(2946456-2946531)
chr3 (107-189)||(2946030-2946111)
[»] chr2 (2 HSPs)
chr2 (143-200)||(21192791-21192848)
chr2 (116-175)||(21192357-21192416)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 2940761 - 2940664
Alignment:
Q  103 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2940761 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcgtctcataatttcatcaaactcttcttttctgct 2940664  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 2945698 - 2945603
Alignment:
Q  103 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctg 198  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  2945698 ataatttttcctctcttgattttagggtttgatttgcctcaagcttataaataggttcaaccccatctcataatatcatcaaactcttcttttctg 2945603  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 2941321 - 2941237
Alignment:
Q  116 tcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctgct 200  Q
    |||||||| || |||||| || ||||||||||||||||||||||||||  ||||||||||  ||| ||| |||| ||| ||||||    
T  2941321 tcttgattctagggtttggttcgcctcaagcttataaataggttcaactccatctcataacatcaccaagctctacttttctgct 2941237  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 2946531 - 2946456
Alignment:
Q  116 tcttgattataaggtttgatttgcctcaagcttataaataggttc-aacctcatctcataatttcatcaaactctt 190  Q
    |||||||| || || ||| |||||||||||||||||||||||||| |||| ||||||||||  ||||||| |||||    
T  2946531 tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctctt 2946456  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 2946111 - 2946030
Alignment:
Q  107 tttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactct 189  Q
    |||| ||| |||||||| || |||||| |||||||||||| ||||| ||||||||||| ||||||||||  ||||||| ||||    
T  2946111 ttttacctttcttgattctagggtttggtttgcctcaagcgtataa-taggttcaaccccatctcataacatcatcaagctct 2946030  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 21192791 - 21192848
Alignment:
Q  143 aagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctgct 200  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  21192791 aagcttataaataggtacaaccccatctcataatttcatcaaactcttcttttctgct 21192848  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 21192357 - 21192416
Alignment:
Q  116 tcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataa 175  Q
    |||||||| || |||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  21192357 tcttgattctagggtttggttttcctcaagcttataaataggttcaaccccatctcataa 21192416  T

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