View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_3 (Length: 625)
Name: NF12173_low_3
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 223 - 606
Target Start/End: Complemental strand, 10587662 - 10587279
Alignment:
| Q |
223 |
gattctaatctttgcaaatatatgtgtttgtagtaatgtatttaatcttgttttttcactatgtggcgtgagttcaaagctaaactacttgtatgttgtg |
322 |
Q |
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| T |
10587662 |
gattctaatctttgcaaatatatgtatttttagtaatgtatttaatcttgttttttcactatgtggcgtgagttcaaagctaaactacttgtgtgttgtg |
10587563 |
T |
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| Q |
323 |
caggaagcattttactgattctcagtgctccagttcttgcaattgcatttcttgccattgcatacctaattatttctggggaggatcagcttcctgagta |
422 |
Q |
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| T |
10587562 |
caggaagcattttactgattctcagtgctcctgttcttgcaattgcatttcttgccattgcatacctaattatttctggggaggatcagcttcctgagta |
10587463 |
T |
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| Q |
423 |
tgtgatttctacatactttccttatctgtgcattggattaattgaatttaatttgtatacactatcagtgtaaatatccaatcatgtttcattattatgt |
522 |
Q |
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| T |
10587462 |
tgtgatttctacatactttccttatctgtgcactggattaattgaatttaatttgtatacactatcagtgtaaatatccaatcatgtttcattattatgt |
10587363 |
T |
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| Q |
523 |
cattttgctatattagttcctaaaatatctctacagatacatatgcaaggagatgcgattgaatgcatctgtagaagtttttta |
606 |
Q |
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| T |
10587362 |
cattttgctatattagttcctaaaatatctctacagatacatatgcaaggagatgcgattgaatgcatgtgtagaagtttttta |
10587279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 10587847 - 10587733
Alignment:
| Q |
9 |
cagaacctgtgcatggattgttctcaaaatggcttaatttcagcagtgaaacttcctttggaatcacaggtaatacatannnnnnncttctattttggtt |
108 |
Q |
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| T |
10587847 |
cagaatctgtgcatggattgttctcaaaatggcttaatttcagcagtgaaacttcctttggaatcacaggtaatacatatttttttcttctattttggtt |
10587748 |
T |
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| Q |
109 |
tcttggtttaaatat |
123 |
Q |
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| T |
10587747 |
tcttggtttaaatat |
10587733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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