View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_4 (Length: 557)
Name: NF12173_low_4
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 296 - 541
Target Start/End: Complemental strand, 38005056 - 38004811
Alignment:
| Q |
296 |
gaggcatgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
395 |
Q |
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| T |
38005056 |
gaggcatgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
38004957 |
T |
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| Q |
396 |
aaagtttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttc |
495 |
Q |
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| T |
38004956 |
aaagtttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttc |
38004857 |
T |
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| Q |
496 |
ttatcagacgttatcatcattccgtaagatttcatgtgttcctctc |
541 |
Q |
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| T |
38004856 |
ttatcagacgttatcatcattccgtaagatttcttgtgttcctctc |
38004811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 38005330 - 38005128
Alignment:
| Q |
18 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
117 |
Q |
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| T |
38005330 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
38005231 |
T |
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| Q |
118 |
tatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
217 |
Q |
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| T |
38005230 |
tatgaggagcttgttgaggctttctaaaaatgttgatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
38005131 |
T |
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| Q |
218 |
gtg |
220 |
Q |
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||| |
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| T |
38005130 |
gtg |
38005128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 26462477 - 26462679
Alignment:
| Q |
18 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
117 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26462477 |
caaataacaaggatacaatgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
26462576 |
T |
|
| Q |
118 |
tatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
217 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26462577 |
tatgaggagcttgttgagactttctaaaaatgttgttgttgatgattttgatccaactgaaccacccaagactgatgttatcactctttagtactttatg |
26462676 |
T |
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| Q |
218 |
gtg |
220 |
Q |
| |
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||| |
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| T |
26462677 |
gtg |
26462679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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