View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_5 (Length: 474)
Name: NF12173_low_5
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 17645011 - 17644569
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17645011 |
aataatgtttttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtgattgaggagggtaaggttggaactggttacctcttga |
17644912 |
T |
|
| Q |
118 |
attaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagagta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
17644911 |
attaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagatactggaaacccagaaagattactttgtgaattgttaacaaggagagga |
17644812 |
T |
|
| Q |
218 |
caataaataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaa |
317 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17644811 |
ccagaaataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaactggttgccttgatgcatttgattcatttcctgtaatgttcttaa |
17644712 |
T |
|
| Q |
318 |
ttaaactcttgaattcatctttgtgaacctcataaaagtttgtctgactagttgtactattgttcgcaacatcaatagtttcttaaaaataaatctttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17644711 |
ttaaactcttgaattcatctttgtgaacctcataaaagtttgactgactagttgtactattgttcgcaacatcaatagtttcttgaaaataaatctttct |
17644612 |
T |
|
| Q |
418 |
tttgttcttccttatttcgtttacacccaacctctcatcatgc |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17644611 |
tttgttcttccttatttcgtttacacccaacctctcatcatgc |
17644569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 17604930 - 17604737
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||| |||| ||||||| ||| ||||| ||||| |||||||||| || ||||| ||||||| ||| |
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|
| T |
17604930 |
aataatgttcttgagatttaattattggatgatattgaaaatttatattgttgaagacttgtgattgatgagggtaaggctgaaactgattacctcctga |
17604831 |
T |
|
| Q |
118 |
attaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaaga |
211 |
Q |
| |
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|||||||||||||||||| | ||||||| |||||||||| ||| || || ||||||| || || ||||||||||||||| | ||||||| |
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| T |
17604830 |
attaccaatgttcagcggaaataggtcttgagagtttctcatcaaagaagatattggaaactcaacaatattactttgtgaattttcaacaaga |
17604737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 17631513 - 17631290
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
||||||||||||||||| || |||||||| || |||||||||| ||||||| ||| ||||| ||||| |||||||| ||| ||||| ||||||| ||| |
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|
| T |
17631513 |
aataatgttcttgagatgtaattattggattatattgaacatttatattgttgaagacttgtgattgattagggtaagattgaaactgattacctcctga |
17631414 |
T |
|
| Q |
118 |
attaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagagta |
217 |
Q |
| |
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|||||||||||| |||||| | |||||||| |||||||||| |||| || || ||||||| || ||||||||| ||| ||||| ||||||| || || |
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| T |
17631413 |
attaccaatgtttagcggcaataagtcttgagagtttctcatcgaagcagatattggaaactcaacaagattactccgtggattgtcaacaagaggatta |
17631314 |
T |
|
| Q |
218 |
caataaataggatgcacatgatgt |
241 |
Q |
| |
|
| | |||||| |||||| ||||| |
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|
| T |
17631313 |
ccagtaataggctgcacaggatgt |
17631290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 16481270 - 16481465
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
|||||||||| || |||| || |||||| |||| |||||||||| | ||||| ||| ||||| ||||| |||| |||||||| ||||| ||||||| ||| |
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|
| T |
16481270 |
aataatgttcatgggatttaattattggctgatattgaacatttatgttgttgaagacttgtgattgatgaggataaggttgaaactgattacctcctga |
16481369 |
T |
|
| Q |
118 |
attaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaag |
213 |
Q |
| |
|
||||||||||||| || | ||||||| |||||||||| |||| || || ||||||| | ||||||||| || ||||||| ||||||||| |
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|
| T |
16481370 |
attaccaatgttcgatgggagtatgtcttgagagtttctcatcgaagaagatattggaaacttaacaagattactatgcgaattgtcaacaagaag |
16481465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 17645554 - 17645336
Alignment:
| Q |
21 |
aatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaatt |
120 |
Q |
| |
|
||||||| |||||||||| |||||| |||| |||||||||| ||||||| || ||| | ||||||||| | |||| |||||||||||||||||||| |
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|
| T |
17645554 |
aatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggaggccatagttgaaactggttacctcttgaatt |
17645455 |
T |
|
| Q |
121 |
accaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagagtacaa |
220 |
Q |
| |
|
||| | ||||| |||| |||||||||||||||||| ||| || |||||| || || ||||||| | |||||||||| ||||||| || || | |
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|
| T |
17645454 |
acccaagttca---atgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattctgtgaattgtaaacaagagaaggacga |
17645358 |
T |
|
| Q |
221 |
taaataggatgcacatgatgtc |
242 |
Q |
| |
|
|||||| ||||||||||||| |
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|
| T |
17645357 |
gtaataggttgcacatgatgtc |
17645336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 17631251 - 17631149
Alignment:
| Q |
250 |
tggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatctttgtgaacctca |
349 |
Q |
| |
|
||||| ||||| |||||| ||| | ||| ||||| |||||||||||| |||||| ||||||| || || ||||||||||||||||||| |||||||||| |
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|
| T |
17631251 |
tggagccgaaacctgaactggatctggtggccttaatgcatttgatttatttcccgtaatgtgctgaacaaaactcttgaattcatcttcgtgaacctca |
17631152 |
T |
|
| Q |
350 |
taa |
352 |
Q |
| |
|
||| |
|
|
| T |
17631151 |
taa |
17631149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 29883431 - 29883364
Alignment:
| Q |
64 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttca |
131 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| || ||| ||||| |
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|
| T |
29883431 |
attgttcaatacttgtgattgagtagggtaaggttgaaactggttacctcttgaactatcaaagttca |
29883364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 29880324 - 29880417
Alignment:
| Q |
64 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatg |
160 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| || || |||||||||||||||||| ||| ||||| |||||||| |||||| ||||||||| |
|
|
| T |
29880324 |
attgttcaatacttgtgattgaggagggtaagactgaaattggttacctcttgaattatcaaagttca---tcgttgagttttgaaaatttctcatg |
29880417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 17631078 - 17631026
Alignment:
| Q |
408 |
aaatctttcttttgttcttccttatttcgtttacacccaacctctcatcatgc |
460 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||| ||| |||| |
|
|
| T |
17631078 |
aaatctttcttttgttcttccttgtttggtttacacccaaactcccattatgc |
17631026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20751397 - 20751500
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
|||||| |||||||||||| |||||| |||| |||||||||| ||||||| || |||| |||| ||||||||||||| || ||||||||| ||| |
|
|
| T |
20751397 |
aataatattcttgagattgggttattggctgatattgaacatttatattgttgaataattgtggttgatgagggtaaggttgaaaatggttaccttctga |
20751496 |
T |
|
| Q |
118 |
atta |
121 |
Q |
| |
|
|||| |
|
|
| T |
20751497 |
atta |
20751500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 16481675 - 16481728
Alignment:
| Q |
375 |
tattgttcgcaacatcaatagtttcttaaaaataaatctttcttttgttcttcc |
428 |
Q |
| |
|
||||||| |||||||||| |||| || |||| ||||||||||||||||||||| |
|
|
| T |
16481675 |
tattgttgccaacatcaattgtttgttgaaaagaaatctttcttttgttcttcc |
16481728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 17950024 - 17950137
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||| || ||| |||||| ||||||| || |||| |||| ||||||||||||| || |||||||| ||| |
|
|
| T |
17950024 |
aataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttaccttatga |
17950123 |
T |
|
| Q |
118 |
attaccaatgttca |
131 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17950124 |
attaccaaagttca |
17950137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 17953876 - 17953989
Alignment:
| Q |
18 |
aataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttga |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||| || ||| |||||| ||||||| || |||| |||| ||||||||||||| || |||||||| ||| |
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|
| T |
17953876 |
aataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttaccttatga |
17953975 |
T |
|
| Q |
118 |
attaccaatgttca |
131 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17953976 |
attaccaaagttca |
17953989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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