View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12173_low_6 (Length: 446)

Name: NF12173_low_6
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12173_low_6
NF12173_low_6
[»] chr3 (21 HSPs)
chr3 (94-310)||(13420512-13420727)
chr3 (84-311)||(25635121-25635347)
chr3 (216-310)||(25633231-25633325)
chr3 (220-311)||(23636726-23636817)
chr3 (222-310)||(23633160-23633248)
chr3 (222-311)||(562160-562249)
chr3 (270-311)||(28100558-28100599)
chr3 (270-311)||(28137791-28137832)
chr3 (270-310)||(7754063-7754103)
chr3 (270-310)||(43423960-43424000)
chr3 (273-312)||(3314402-3314441)
chr3 (19-62)||(25633902-25633945)
chr3 (276-311)||(36011526-36011561)
chr3 (276-311)||(43421937-43421972)
chr3 (273-312)||(47149420-47149459)
chr3 (270-308)||(1627200-1627238)
chr3 (268-310)||(8183207-8183249)
chr3 (284-314)||(28761952-28761982)
chr3 (273-310)||(3306518-3306555)
chr3 (273-310)||(6231169-6231206)
chr3 (90-137)||(1620729-1620779)
[»] chr8 (10 HSPs)
chr8 (98-308)||(21482125-21482313)
chr8 (19-77)||(21480546-21480604)
chr8 (270-310)||(26774978-26775018)
chr8 (254-310)||(30481038-30481096)
chr8 (280-310)||(15186217-15186247)
chr8 (19-77)||(21482354-21482412)
chr8 (270-312)||(33541886-33541928)
chr8 (278-312)||(40878060-40878094)
chr8 (270-311)||(27107415-27107456)
chr8 (37-77)||(36865570-36865610)
[»] chr1 (15 HSPs)
chr1 (244-310)||(18801043-18801109)
chr1 (19-77)||(6115326-6115384)
chr1 (247-310)||(15669869-15669932)
chr1 (22-77)||(49495449-49495504)
chr1 (273-311)||(16430822-16430860)
chr1 (270-312)||(50249093-50249135)
chr1 (278-311)||(31423403-31423436)
chr1 (270-310)||(17323785-17323825)
chr1 (278-310)||(17352797-17352829)
chr1 (270-309)||(25251775-25251814)
chr1 (278-312)||(17186656-17186690)
chr1 (270-311)||(25249014-25249055)
chr1 (273-310)||(50079346-50079383)
chr1 (278-311)||(50308045-50308078)
chr1 (273-313)||(14184110-14184150)
[»] chr5 (7 HSPs)
chr5 (243-304)||(34531138-34531199)
chr5 (270-311)||(20044756-20044797)
chr5 (271-310)||(24126579-24126618)
chr5 (273-310)||(1190117-1190154)
chr5 (270-307)||(2723698-2723735)
chr5 (278-310)||(695631-695663)
chr5 (270-310)||(20042770-20042810)
[»] chr4 (12 HSPs)
chr4 (243-310)||(18409818-18409885)
chr4 (254-310)||(18537973-18538029)
chr4 (254-311)||(18535281-18535338)
chr4 (270-311)||(6132646-6132687)
chr4 (270-311)||(27498964-27499005)
chr4 (276-310)||(2891134-2891168)
chr4 (278-311)||(33415987-33416020)
chr4 (273-310)||(37313563-37313600)
chr4 (270-311)||(47564497-47564538)
chr4 (37-77)||(2891347-2891387)
chr4 (278-310)||(38270511-38270543)
chr4 (37-77)||(38928441-38928481)
[»] chr6 (12 HSPs)
chr6 (254-311)||(26944925-26944982)
chr6 (19-78)||(15719664-15719723)
chr6 (19-77)||(15346402-15346460)
chr6 (271-311)||(3630383-3630423)
chr6 (270-310)||(3632454-3632494)
chr6 (270-310)||(13056949-13056989)
chr6 (273-311)||(3396094-3396132)
chr6 (273-310)||(3390132-3390169)
chr6 (279-312)||(32447844-32447877)
chr6 (278-310)||(13039509-13039541)
chr6 (276-312)||(13870875-13870911)
chr6 (278-310)||(24338996-24339028)
[»] chr7 (15 HSPs)
chr7 (19-77)||(24465535-24465593)
chr7 (247-310)||(20092017-20092080)
chr7 (94-168)||(30906392-30906464)
chr7 (270-310)||(22829131-22829171)
chr7 (19-77)||(22392459-22392517)
chr7 (276-310)||(39146490-39146524)
chr7 (278-310)||(11355010-11355042)
chr7 (273-311)||(20137631-20137669)
chr7 (276-310)||(21677796-21677830)
chr7 (270-312)||(27833153-27833195)
chr7 (273-310)||(24817872-24817909)
chr7 (278-310)||(4296423-4296455)
chr7 (279-311)||(9680541-9680573)
chr7 (37-77)||(22828896-22828936)
chr7 (270-310)||(24748346-24748386)
[»] chr2 (13 HSPs)
chr2 (21-77)||(37963174-37963230)
chr2 (19-68)||(22874103-22874152)
chr2 (269-310)||(11740037-11740078)
chr2 (270-311)||(15539995-15540036)
chr2 (19-68)||(18800547-18800596)
chr2 (270-310)||(3021839-3021879)
chr2 (270-310)||(22163445-22163485)
chr2 (273-311)||(31733247-31733285)
chr2 (273-311)||(38414530-38414568)
chr2 (273-311)||(45239463-45239501)
chr2 (152-185)||(8173505-8173538)
chr2 (270-310)||(14836971-14837011)
chr2 (273-309)||(17848812-17848848)
[»] scaffold0964 (1 HSPs)
scaffold0964 (222-310)||(1224-1308)
[»] scaffold0004 (1 HSPs)
scaffold0004 (278-310)||(79661-79693)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 94 - 310
Target Start/End: Original strand, 13420512 - 13420727
Alignment:
Q  94 tcataaaattggaacaaatccagcccaaaatacgttatattttttattttctgttctgcaaattcggccaccgaatttgctcttcggccaccaaagaaac 193  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||| | |||||||    
T  13420512 tcataaaattgaaacaaatccagcccaaaatacgttatatttt-tattttctgttccgcaaattcagccaccgaatttgctcttaggccatcgaagaaac 13420610  T
Q  194 acgcatcaaaagggctaaaaactcagtaaaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaatttt 293  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  13420611 acgcattaaaagggctaaaatctcagtcaaattcggccactgagccagtcaagtcggccaccgacgttgacagcatcagaactccaatttcttcaatttt 13420710  T
Q  294 gagtcactttcacaaca 310  Q
    |||||||||||||||||    
T  13420711 gagtcactttcacaaca 13420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 84 - 311
Target Start/End: Complemental strand, 25635347 - 25635121
Alignment:
Q  84 aaagcctccctcataaaattggaacaaatccagcccaaaatacgttatattttttattttctgttctgcaaattcggccaccgaatttgctcttcggcca 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| | | |||||||||||||||||||||||||||||    
T  25635347 aaagcatccctcataaaattggaacaaatccagcccaaaatacgttacaatttt-attttctgttccgtatattcggccaccgaatttgctcttcggcca 25635249  T
Q  184 ccaaagaaacacgcatcaaaagggctaaaaactcagtaaaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaattt 283  Q
    || ||||||||| |||||||||||||||||||| ||| ||||||||||||   ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  25635248 ccgaagaaacactcatcaaaagggctaaaaacttagtcaaattcggccacactgccagtcaattcgaccaccgatgctgacaacatcagaactccaattt 25635149  T
Q  284 cttcaattttgagtcactttcacaacaa 311  Q
    ||||||||||||||||||||||||||||    
T  25635148 cttcaattttgagtcactttcacaacaa 25635121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 25633325 - 25633231
Alignment:
Q  216 tcagtaaaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  25633325 tcagtcaaattcggccaccgagccagtcaattcggccaccgatgttgacagcatcagaactccaatttcttcaattttgaatcactttcacaaca 25633231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 23636817 - 23636726
Alignment:
Q  220 taaaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||||||| |||||  ||||||||||||||||||||||  | ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  23636817 taaaattctgccaccaagccagtcaattcggccaccgaattagacaacatcggaactccaatttctccaattttgagtcactttcacaacaa 23636726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 23633248 - 23633160
Alignment:
Q  222 aaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||| |||| ||||||||||||||||||  | ||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  23633248 aaattcggccaccgagctagtcaattcggccaccgaattagacaatatcataactctaatttcttcaattttgagtcactttcacaaca 23633160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 562160 - 562249
Alignment:
Q  222 aaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||||||||||| |||| |  ||||| |||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  562160 aaattcggccaccgagctatccaattgggccaccgaattagacagcatcagaactccaatttcttcaattttgagtcactttcacaacaa 562249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 28100558 - 28100599
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  28100558 cagaattccaatttcttcaattttgaggcactttcacaacaa 28100599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 28137791 - 28137832
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  28137791 cagaattccaatttcttcaattttgaggcactttcacaacaa 28137832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 7754103 - 7754063
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  7754103 cagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 43423960 - 43424000
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  43423960 cagaattccaatttcttcaattttgaggcactttcacaaca 43424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 3314441 - 3314402
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  3314441 aacttcaatttcttcaattttgaatcactttcacaacaaa 3314402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 25633945 - 25633902
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccct 62  Q
    ||||||||||||||||||||||||||  |||| |||||||||||    
T  25633945 atacaaaccctagtttgatttctaaaaccttgtttcagccccct 25633902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 36011561 - 36011526
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36011561 tccaatttcttcaattttgaggcactttcacaacaa 36011526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 43421937 - 43421972
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||||||||||||||||||| ||||||||||||||    
T  43421937 tccaatttcttcaattttgaggcactttcacaacaa 43421972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 47149420 - 47149459
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  47149420 aacttcaatttctccaattttgagtcactttcacaacaaa 47149459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 1627200 - 1627238
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaa 308  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  1627200 cagaattccaatttcttcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 8183207 - 8183249
Alignment:
Q  268 atcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  8183207 atcagaatttcaatttcttcaattttgaggcactttcacaaca 8183249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 314
Target Start/End: Original strand, 28761952 - 28761982
Alignment:
Q  284 cttcaattttgagtcactttcacaacaaagt 314  Q
    |||||||||||||||||||||||||||||||    
T  28761952 cttcaattttgagtcactttcacaacaaagt 28761982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 3306555 - 3306518
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  3306555 aacttcaatttctccaattttgagtcactttcacaaca 3306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 6231206 - 6231169
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  6231206 aacttcaatttctccaattttgagtcactttcacaaca 6231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 1620729 - 1620779
Alignment:
Q  90 tccctcataaaattggaacaaatccagccc---aaaatacgttatattttt 137  Q
    |||||||||||||||||||||||| |||||   ||||||| ||||||||||    
T  1620729 tccctcataaaattggaacaaatctagcccataaaaatacattatattttt 1620779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 98 - 308
Target Start/End: Complemental strand, 21482313 - 21482125
Alignment:
Q  98 aaaattggaacaaatccagcccaaaatacgttatattttttattttctgttctgcaaattcggccaccgaatttgctcttcggccaccaaagaaacacgc 197  Q
    |||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||| ||||||| |||||||| |||| ||||| |||||||| ||    
T  21482313 aaaactggaacaaatctaggccaaaatacgttatattttt-attttatgttccgcaaatttggccaccaaatttgctattcgaccaccgaagaaacatgc 21482215  T
Q  198 atcaaaagggctaaaaactcagtaaaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagt 297  Q
    |||||||| ||||||||||||||      ||               ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21482214 atcaaaagagctaaaaactcagt------cg---------------aattcggccaccgatgttgacaatatcagaacttcaatttcttcaattttgagt 21482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 21480604 - 21480546
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | ||||| ||||||||    
T  21480604 atacaaaccctagtttgatttctaaacccttgtttcagccccatctatctcaaggttta 21480546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 26775018 - 26774978
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  26775018 cagaattccaatttcttcaattttgaggcactttcacaaca 26774978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 30481038 - 30481096
Alignment:
Q  254 ccgatgttgacaacatcag--aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| |||||||| ||||  |||| |||||||| ||||||||||||||||||||||||    
T  30481038 ccgattttgacaacttcagcaaacttcaatttctccaattttgagtcactttcacaaca 30481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 15186217 - 15186247
Alignment:
Q  280 atttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||||||||||||||||||||||    
T  15186217 atttcttcaattttgagtcactttcacaaca 15186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 21482412 - 21482354
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||||||||||||||||||||| |||| ||||| || || ||||| || |||||    
T  21482412 atacaaaccctagtttgatttctaaacccttgtttcagtccactctatctcaaagttta 21482354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 33541886 - 33541928
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||    
T  33541886 cagaattccaatttctttaattttgaggcactttcacaacaaa 33541928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 40878060 - 40878094
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaacaaa 312  Q
    |||||||| ||||||||||||||||||||||||||    
T  40878060 caatttctccaattttgagtcactttcacaacaaa 40878094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 27107415 - 27107456
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| || |||||||||||||||||| ||||||||||||||    
T  27107415 cagaattctaatttcttcaattttgaggcactttcacaacaa 27107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 36865610 - 36865570
Alignment:
Q  37 tttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  36865610 tttctaaacccttgtttcagccccctctatcttaaggttta 36865570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 18801043 - 18801109
Alignment:
Q  244 aattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  18801043 aattcggccaccgatgttggcagcatcagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 6115326 - 6115384
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    |||||||||||| |||||||||||||| |||| ||||||||||| ||||| ||||||||    
T  6115326 atacaaaccctaatttgatttctaaacccttgtttcagccccctctatctcaaggttta 6115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 15669869 - 15669932
Alignment:
Q  247 tcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||  | |||| | ||||||||||||||||||||||||| ||| ||||||||||||    
T  15669869 tcggccaccgaattagacagcgtcagaactccaatttcttcaattttaagttactttcacaaca 15669932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 49495449 - 49495504
Alignment:
Q  22 caaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    |||||||||||||||||| ||||| |||| ||||||||||| ||||| ||||||||    
T  49495449 caaaccctagtttgatttataaacccttgtttcagccccctctatctcaaggttta 49495504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 16430860 - 16430822
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  16430860 aactccaatttattcaattttgagtcactttcacaacaa 16430822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 50249093 - 50249135
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  50249093 cagaattccaatttcttcaattttgaggcactttcacaacaaa 50249135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 31423403 - 31423436
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||||||||||||||||||||||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaacaa 31423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 17323825 - 17323785
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17323825 cagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||||||||||||||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 25251775 - 25251814
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaac 309  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  25251775 cagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 17186656 - 17186690
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaacaaa 312  Q
    ||||||||||||||||||||| |||||||||||||    
T  17186656 caatttcttcaattttgagtcgctttcacaacaaa 17186690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 25249014 - 25249055
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| |||| |||||||||    
T  25249014 cagaattccaatttcttcaattttgaggcactatcacaacaa 25249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 50079346 - 50079383
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  50079346 aacttcaatttcttcaatttggagtcactttcacaaca 50079383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 50308045 - 50308078
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaacaa 311  Q
    |||||||| |||||||||||||||||||||||||    
T  50308045 caatttctccaattttgagtcactttcacaacaa 50308078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 14184110 - 14184150
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaaag 313  Q
    |||| |||||||| ||||||| |||||||||||||||||||    
T  14184110 aacttcaatttctccaattttaagtcactttcacaacaaag 14184150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 34531138 - 34531199
Alignment:
Q  243 caattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttc 304  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34531138 caattcagccaccgatgttgacaacaccagaactccaatttcttcaattttgagtcactttc 34531199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 20044797 - 20044756
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  20044797 cagaattccaatttcttcaattttgagtcactttcacaacaa 20044756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 24126618 - 24126579
Alignment:
Q  271 agaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  24126618 agaattccaatttcttcaattttgagacactttcacaaca 24126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 1190117 - 1190154
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  1190117 aacttcaatttctccaattttgagtcactttcacaaca 1190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 2723735 - 2723698
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcaca 307  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  2723735 cagaattccaatttcttcaattttgaggcactttcaca 2723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 695663 - 695631
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||| |||||||||||||    
T  695663 caatttcttcaattttgaggcactttcacaaca 695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 20042810 - 20042770
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  20042810 cagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 18409818 - 18409885
Alignment:
Q  243 caattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||    
T  18409818 caattcggccaccgatgttgacaaaaccataactccaatttcttcaattttgagtcactttctcaaca 18409885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 18537973 - 18538029
Alignment:
Q  254 ccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  18537973 ccgattttgacagcttcagaacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 18535281 - 18535338
Alignment:
Q  254 ccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| |||||| | | |||||||||||||||||||| ||||||||||||||||||||    
T  18535281 ccgattttgacagctttagaactccaatttcttcaatattgagtcactttcacaacaa 18535338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 6132687 - 6132646
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  6132687 cagaattccaatttcttcaattttgaggcactttcacaacaa 6132646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 27499005 - 27498964
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  27499005 cagaattccaatttcttcaattttgaggcactttcacaacaa 27498964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 2891168 - 2891134
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  2891168 tccaatttcttcaattttgaggcactttcacaaca 2891134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 33415987 - 33416020
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaacaa 311  Q
    |||||||| |||||||||||||||||||||||||    
T  33415987 caatttctccaattttgagtcactttcacaacaa 33416020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 37313563 - 37313600
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  37313563 aacttcaatttctccaattttgagtcactttcacaaca 37313600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 47564538 - 47564497
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| || |||||||||||||||||| ||||||||||||||    
T  47564538 cagaattctaatttcttcaattttgaggcactttcacaacaa 47564497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2891387 - 2891347
Alignment:
Q  37 tttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  2891387 tttctaaacccttgtttcagccccctctatcttaaggttta 2891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 38270511 - 38270543
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||| |||||||||||||    
T  38270511 caatttcttcaattttgaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 38928441 - 38928481
Alignment:
Q  37 tttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  38928441 tttctaaactcttgtttcagccccctctatctcaaggttta 38928481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 26944982 - 26944925
Alignment:
Q  254 ccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26944982 ccgattttgacagcatcagaactccaatttcttcaattttgagtcactttcacaacaa 26944925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15719723 - 15719664
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggtttat 78  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  15719723 atacaaaccctagtttgatttctaaacccttgtttcagccccctctatctcaaggtttat 15719664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 15346460 - 15346402
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    |||||||||||||||||| |||||||| |||| ||||||||||| ||||| ||||||||    
T  15346460 atacaaaccctagtttgaattctaaacccttggttcagccccctctatctcaaggttta 15346402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 3630383 - 3630423
Alignment:
Q  271 agaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  3630383 agaattccaatttcttcaattttgaggcactttcacaacaa 3630423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 3632454 - 3632494
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  3632454 cagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 13056989 - 13056949
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  13056989 cagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 3396132 - 3396094
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  3396132 aacttcaatttctccaattttgagtcactttcacaacaa 3396094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 3390169 - 3390132
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  3390169 aacttcaatttctccaattttgagtcactttcacaaca 3390132  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 32447844 - 32447877
Alignment:
Q  279 aatttcttcaattttgagtcactttcacaacaaa 312  Q
    ||||||| ||||||||||||||||||||||||||    
T  32447844 aatttctccaattttgagtcactttcacaacaaa 32447877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 13039541 - 13039509
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||| |||||||||||||    
T  13039541 caatttcttcaattttgaggcactttcacaaca 13039509  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 13870875 - 13870911
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    |||||||||||||||||| || |||||||||||||||    
T  13870875 tccaatttcttcaattttaaggcactttcacaacaaa 13870911  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 24338996 - 24339028
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||| |||||||||||||    
T  24338996 caatttcttcaattttgaggcactttcacaaca 24339028  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 24465593 - 24465535
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||    
T  24465593 atacaaaccctagtttgatttctaaacccttgtttcagccccctctatctcaaggttta 24465535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 20092017 - 20092080
Alignment:
Q  247 tcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||  | || |||||||||||||||||||||| |||||| ||||||||||||||||    
T  20092017 tcggccaccgaattagataacatcagaactccaatttctttaattttaagtcactttcacaaca 20092080  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 30906392 - 30906464
Alignment:
Q  94 tcataaaattggaacaaatccagcccaaaatacgttatattttttattttctgttctgcaaattcggccaccgaa 168  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||| |||||| |  |||||||||||||||    
T  30906392 tcataaaattggaagaaatccagcctaaaatacgttatattttt--tttcctgttccgacaattcggccaccgaa 30906464  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 22829131 - 22829171
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  22829131 cagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22392517 - 22392459
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||| || |||||    
T  22392517 atacaaaccctagtttgatttataaacccttgtttcagccccctctatctcaaagttta 22392459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 39146490 - 39146524
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||||||||||||||||||||||||||    
T  39146490 tccaatttcttcaattttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 11355042 - 11355010
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||||||||||||||||||||||||    
T  11355042 caatttcttcaattttgagtcactttcacaaca 11355010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 20137631 - 20137669
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  20137631 aacttcaatttctccaattttgagtcactttcacaacaa 20137669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 21677830 - 21677796
Alignment:
Q  276 tccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  21677830 tccaatttcttcaattttgaggcactttcacaaca 21677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 27833153 - 27833195
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaaa 312  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  27833153 cagaattctaatttcttcaattttgaggcactttcacaacaaa 27833195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 24817872 - 24817909
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  24817872 aacttcaatttctccaattttgagtcactttcacaaca 24817909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 4296423 - 4296455
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||| ||||||||||||||||||||||||    
T  4296423 caatttctccaattttgagtcactttcacaaca 4296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 9680573 - 9680541
Alignment:
Q  279 aatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||||| |||||||||||||||||||||||||    
T  9680573 aatttctccaattttgagtcactttcacaacaa 9680541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 22828896 - 22828936
Alignment:
Q  37 tttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  22828896 tttctaaactcttgtttcagccccctctatctcaaggttta 22828936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 24748386 - 24748346
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| || ||||| ||||||||||||||||||||||||||    
T  24748386 cagaattctaattttttcaattttgagtcactttcacaaca 24748346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 37963174 - 37963230
Alignment:
Q  21 acaaaccctagtttgatttctaaactcttgattcagccccctgtatcttaaggttta 77  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||    
T  37963174 acaaaccctagtttgatttctaaacccttgtttcagccccctctatctcaaggttta 37963230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 22874152 - 22874103
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatct 68  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  22874152 atacaaaccctagtttgatttctaaacccttgtttcagccccctctatct 22874103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 11740037 - 11740078
Alignment:
Q  269 tcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  11740037 tcagaattccaatttcttcaattttgaggcactttcacaaca 11740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 15539995 - 15540036
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  15539995 cagaattccaatttcttcaattttgaggcactttcacaacaa 15540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18800547 - 18800596
Alignment:
Q  19 atacaaaccctagtttgatttctaaactcttgattcagccccctgtatct 68  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||| |||||    
T  18800547 atacaaaccctagcttgatttctaaacccttgtttcagccccctatatct 18800596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 3021879 - 3021839
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  3021879 cagaattccaatttcttcaattttgaggcactttcacaaca 3021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 22163445 - 22163485
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  22163445 cagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 31733247 - 31733285
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  31733247 aacttcaatttctccaattttgagtcactttcacaacaa 31733285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 38414530 - 38414568
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  38414530 aacttcaatttctccaattttgagtcactttcacaacaa 38414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 45239463 - 45239501
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaacaa 311  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  45239463 aacttcaatttctccaattttgagtcactttcacaacaa 45239501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 8173538 - 8173505
Alignment:
Q  152 caaattcggccaccgaatttgctcttcggccacc 185  Q
    |||||||||||||||| |||||||||||||||||    
T  8173538 caaattcggccaccgattttgctcttcggccacc 8173505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 14837011 - 14836971
Alignment:
Q  270 cagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  14837011 cagaattctaatttcttcaattttgaggcactttcacaaca 14836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 17848848 - 17848812
Alignment:
Q  273 aactccaatttcttcaattttgagtcactttcacaac 309  Q
    |||| |||||||| |||||||||||||||||||||||    
T  17848848 aacttcaatttctccaattttgagtcactttcacaac 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 1224 - 1308
Alignment:
Q  222 aaattcggccactgagccagtcaattcggccaccgatgttgacaacatcagaactccaatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||||||| |||| |  |||||||||||||||  |||||| ||||    ||||||||||| ||||||||||||||||||||||||    
T  1224 aaattcggccaccgagctatccaattcggccaccgaaattgacagcatc----ctccaatttctacaattttgagtcactttcacaaca 1308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 79693 - 79661
Alignment:
Q  278 caatttcttcaattttgagtcactttcacaaca 310  Q
    |||||||| ||||||||||||||||||||||||    
T  79693 caatttctccaattttgagtcactttcacaaca 79661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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