View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_7 (Length: 399)
Name: NF12173_low_7
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 29299376 - 29299005
Alignment:
| Q |
10 |
aacctgtggaagatcatctatatatgtttcaggaatatctatatctgcaagaatattactatttatcgccattgctgctttaagaatttgattagcacaa |
109 |
Q |
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| T |
29299376 |
aacctgtggaagatcatctatatatgtttcaggaatatctatatctgcaagaatattactatttatcgccattgctgctttaagaatttgattagcacaa |
29299277 |
T |
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| Q |
110 |
tcccttttctctgtaaggtatttccttgacttctcagagaggccaccagggagaacacaaggaactggcaaccaccatttctcgtctttccttggagcaa |
209 |
Q |
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| T |
29299276 |
tcccttttctctgtaaggtgtttccttgacttctcagagaggccaccagggagaacacaaggaactggcaaccaccatttctcgtctttcctttgagcaa |
29299177 |
T |
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| Q |
210 |
tccttcgaaacgaggctgcacgtaaacgaggcgaacttgctgatacgttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaa |
309 |
Q |
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| T |
29299176 |
tccttcgaaacgaggctgcacgtaaacgaggcgaacttgctgatacgttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaa |
29299077 |
T |
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| Q |
310 |
acaacattgtcatgtttatcagtcacaagaacttgatgaaaaacttagttctcacatgaaagaagcaaatga |
381 |
Q |
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| T |
29299076 |
acaacattgtcatgtttatcagtcacaagaacttgatgaaaaacttagttctcgcatgaaagaagcaaatga |
29299005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 11475707 - 11475903
Alignment:
| Q |
32 |
tatgtttcaggaatatctatatctgcaagaatattactatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtatt |
131 |
Q |
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| T |
11475707 |
tatgtttctggaatgtccatctctgcaagaacactgctatttattgccatagctgctttatgaatttgattagcacaatctcttttctcaatcaaatgct |
11475806 |
T |
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| Q |
132 |
tccttgacttctcagagaggccaccagggagaacacaaggaactggcaaccaccatttctcgtctttccttggagcaatccttcgaaacgaggctgc |
228 |
Q |
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| T |
11475807 |
tccttgacttatcagagaggccaccagtgtgaacacaaggaactggcaaccaccatttctcatcttttctttgagcaataattcgaaacgagcctgc |
11475903 |
T |
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