View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12173_low_9 (Length: 380)
Name: NF12173_low_9
Description: NF12173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12173_low_9 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 28283998 - 28283632
Alignment:
| Q |
1 |
gaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283998 |
gaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaa |
28283899 |
T |
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| Q |
101 |
atggctccttcctcctccaaaggtctaattaatgtggcttgaagagttttgtcgtgcaccccgcattttagtgagtggtgaatctgtagaatcatctcca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283898 |
atggctccttcctcctccaaaagtctaattaatgtggcttgaagagttttgtcgtgcaccccgcattttagtgagtggtgaatctgtagaatcatctcca |
28283799 |
T |
|
| Q |
201 |
acaacattttcttcttgtgtttctccaacaacattattagctaatatcattaagctttggccattattagctaaagcgtctacaacaacatttccttctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28283798 |
acaacattttcttcttgtgtttctccaacaacattattagctaatatcattaagctttggccattattagctaaagcatctacaacaacatttccttctc |
28283699 |
T |
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| Q |
301 |
tatgcatatgggtacggtgacactcaatacactcaatacttcttagagtagtcttgcaattcatccacctatttctt |
377 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283698 |
tatgtatatgggtac-----cac-----ccactcaatacttcttagagtagtcttgcaattcatccacctatttctt |
28283632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 31114098 - 31113912
Alignment:
| Q |
1 |
gaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaa |
100 |
Q |
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||||||| |||||||| ||||| |||| || | || ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
31114098 |
gaccaaaatcagatccgaaagggcgtgtaagtatcacaaagcaactaagtgaagcagaggttaaacctttcattacacttggaatgattcaaggatcaaa |
31113999 |
T |
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| Q |
101 |
atggctccttcctcctccaaaggtctaatta----atgtggcttgaagagttttgtcgtgcaccccgcattttagtgagtggtgaat |
183 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||| |||||||||| | |||||||| |||||||||||||||||||| |
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| T |
31113998 |
atggctccttcctcctccaaaagtctaattaatgtatgtggcttcaagagttttgccttgcaccccacattttagtgagtggtgaat |
31113912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 174354 - 174488
Alignment:
| Q |
1 |
gaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaa |
100 |
Q |
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|||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
174354 |
gaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggttaaacctttcattacacttggaatgattcaagcatctaa |
174453 |
T |
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| Q |
101 |
atggctccttcctcctccaaaggtctaattaatgt |
135 |
Q |
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| T |
174454 |
atggctccttcctcctccaaaagtctaattaatgt |
174488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 179867 - 180001
Alignment:
| Q |
1 |
gaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaa |
100 |
Q |
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|||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
179867 |
gaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggttaaacctttcattacacttggaatgattcaagcatctaa |
179966 |
T |
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| Q |
101 |
atggctccttcctcctccaaaggtctaattaatgt |
135 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
179967 |
atggctccttcctcctccaaaagtctaattaatgt |
180001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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