View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12174_high_1 (Length: 641)
Name: NF12174_high_1
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 15 - 622
Target Start/End: Complemental strand, 45787803 - 45787192
Alignment:
| Q |
15 |
cagagactgaaaattatatatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787803 |
cagagactgaaaattatatatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
45787704 |
T |
|
| Q |
114 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787703 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
45787604 |
T |
|
| Q |
214 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcgtaacatcaccatcatgcaccatccaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45787603 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcataacatcaccatcatgcaccatccaa |
45787504 |
T |
|
| Q |
314 |
---gtcaataagcccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcg |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787503 |
caagtcaataaacccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcg |
45787404 |
T |
|
| Q |
411 |
tgaatttcacagaatacacaccatgtgaggatccgacgagatcattgaggtataagcggagtagaatgatttatagggaaagacactgtccggttaaagg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787403 |
tgaatttcacagaatacacaccatgtgaggatccgactagatctttgaggtataagcggagtagaatgatttatagggaaagacactgtccggttaaagg |
45787304 |
T |
|
| Q |
511 |
ggaagaggatctgaagtgtagggttcctccacctcatggttacaagactccttttacttggccggctagtagggatgttgcttggtatgctaatgtccct |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787303 |
ggaagaggatctgaagtgtagggttcctccacctcatggttacaagactccttttacttggccggctagtagggatgttgcttggtatgctaatgtccct |
45787204 |
T |
|
| Q |
611 |
caccgtgaactc |
622 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45787203 |
caccgtgaactc |
45787192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University