View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_10 (Length: 411)
Name: NF12174_high_10
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 23932819 - 23933196
Alignment:
| Q |
18 |
agatatgaaagaacattaagaagaagaaagaaaaaactaactctgctatactcctccagccaagactcttcgtcacatgctgataaccatttctcaacat |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23932819 |
agatatgaaagaacaataagaagaagaaagaaaaaactaactctgctatactcctccagccaagactcttcgtcacatgccgataaccacttctcaacat |
23932918 |
T |
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| Q |
118 |
tttcaagtatttctattctgctaaaagcttcctctttgacttgggaaatctgacgctcaatttgttcaagcacataagcagggtctacagatcctgcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23932919 |
tttcaagtatttctattctgctaaaagcttcctctttgacttgggaaatctgacgctcaatttgttcaagcacataagcagggtctacagatcctgcatg |
23933018 |
T |
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| Q |
218 |
agaaaagaagatgaaggtttaggagtttaaagaagaaagaaagaatgacactcatccagtggtatcgctcttggacattaccagactcaatagccttttc |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23933019 |
agaaaagaagatgcaggtttaggagtttaaagaagaaagaaagaatggcactcatccagtggtatcgctcttggacattaccagactcaatagccttttc |
23933118 |
T |
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| Q |
318 |
gatcgcagcatcagattcttgaaccaaatgagtctttctacaaatctcctctagctcggctctttttctccaaacaag |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23933119 |
gatcgcagcatcagattcttgaaccaaatgagtctttctacaaatctcctctagctcggctctttttttccaaacaag |
23933196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 34236862 - 34236698
Alignment:
| Q |
52 |
aactaactctgctatactcctccagccaagactcttcgtcacatgctgataaccatttctcaacattttcaagtatttctattctgctaaaagcttcctc |
151 |
Q |
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||||||| ||| |||| ||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||| ||| | ||||||||||| |
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| T |
34236862 |
aactaaccctgttatattcctcaagccaagactcttcgttacatgcagccaaccatttctcaaccttttcaagtatgtcttttcgacccaaagcttcctc |
34236763 |
T |
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| Q |
152 |
tttgacttgggaaatctgacgctcaatttgttcaagcacataagcagggtctacagatcctgcat |
216 |
Q |
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||| ||||||| || ||| ||||||| |||||||||||| | |||||||| ||| |||||||| |
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| T |
34236762 |
tttaacttgggcaacctggcgctcaaactgttcaagcacacatgcagggtccacaattcctgcat |
34236698 |
T |
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