View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_12 (Length: 398)
Name: NF12174_high_12
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 49484198 - 49483844
Alignment:
| Q |
14 |
cacaaatgtcagatgttgatctcatggattgggatgttgaattcgtcaatgttcactatacaactttgtttgaccttgttttatcttcaaactacatgaa |
113 |
Q |
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| T |
49484198 |
cacaaatgtcagatgttgatctcatggattgggatgttgaattcgtcaatgttcactatacaactttgtttgaccttgttttatcttcaaactacatgaa |
49484099 |
T |
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| Q |
114 |
catcaacagtctgtataacctggtaggtggtaaaataggagacatgataaaaggaaagacagcaggtgaaattgcccagttatttgacattaaagatgtt |
213 |
Q |
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| T |
49484098 |
catcaacagtctgtataacctggtaggtggtaaaataggagacatgataaaaggaaagacagcaggtgaaattgcccagttatttgacattaaagatgtt |
49483999 |
T |
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| Q |
214 |
tgtacacaggaagagtaaaaccagtaaagtcttgaaattttcagctaaaaaatatacctgaagttttattcctgtttcgtttatcatttaatattcaatg |
313 |
Q |
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| T |
49483998 |
tgtacacaggaagagcaaaaccagtgaagtcttgaaattttcagctaaaaaatatacctgaagtttatttcctgtttcgtttatcatttaatcttcaatg |
49483899 |
T |
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| Q |
314 |
gctctttgtttgttggagagaatataacatgttgtctagtatttcagatcattac |
368 |
Q |
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| T |
49483898 |
gctctttgtttgttggagcgaatataacatgttgtctagtatttcagatcattac |
49483844 |
T |
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