View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_2 (Length: 638)
Name: NF12174_high_2
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 73 - 537
Target Start/End: Original strand, 49766414 - 49766881
Alignment:
| Q |
73 |
aacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctcttggaagaa |
172 |
Q |
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| T |
49766414 |
aacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctcttggaagaa |
49766513 |
T |
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| Q |
173 |
gttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagttactacctc |
272 |
Q |
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| T |
49766514 |
gttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagttactacctc |
49766613 |
T |
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| Q |
273 |
ttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgtcgtagcagatgcagaaacagaggttttcttcttctttctcttagctaagag |
372 |
Q |
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| T |
49766614 |
ttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgacgtagcagatgcagaaacagaggttttcttcttctttttcttagctaagag |
49766713 |
T |
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| Q |
373 |
aaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggacaaacagagagtgagagagaagaagat |
472 |
Q |
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| T |
49766714 |
aaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggacaaacagagagtgagagagaagaagat |
49766813 |
T |
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| Q |
473 |
gaagttacagcagttgtagctgatacagtgttgatg---gaagaagaagaaggacaatgacgagtagt |
537 |
Q |
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| T |
49766814 |
gaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt |
49766881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 49766368 - 49766396
Alignment:
| Q |
27 |
aacctgtgttgttgctattaggactgtta |
55 |
Q |
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| T |
49766368 |
aacctgtgttgttgctattaggactgtta |
49766396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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