View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_3 (Length: 583)
Name: NF12174_high_3
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Complemental strand, 51740915 - 51740358
Alignment:
| Q |
18 |
tcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgcccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740915 |
tcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgcccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatg |
51740816 |
T |
|
| Q |
118 |
aattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaaggtcagcattttccttttcatgaaacaataaattggatttgatcttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740815 |
aattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaaggtcagcattttccttttcatgaaacaataaattggatttgatcttctt |
51740716 |
T |
|
| Q |
218 |
cacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatacatgcattgctagtattgttgcaagtattgatgatacttgacgagga |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740715 |
cacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgagga |
51740616 |
T |
|
| Q |
318 |
tcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740615 |
tcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaa |
51740516 |
T |
|
| Q |
418 |
aagacacaataattcctgatattattgtgttaagtactattgctactagcacaatgttgcaatcttctgcatttaaatcctgtatatacaataataacca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740515 |
aagacacaataattcctgatattattgtgttaagtactattgctactagcacaacgttgcaatcttctgcatttaaatcctgtatatacaataataacca |
51740416 |
T |
|
| Q |
518 |
aattaagagttatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
575 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740415 |
aattaagagtaatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
51740358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 36 - 468
Target Start/End: Complemental strand, 10201695 - 10201260
Alignment:
| Q |
36 |
tcttcatacaagcttggaaaagatgatactgcccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacga |
135 |
Q |
| |
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|||||||||| ||| ||||||| || |||| |||| |||| || |||||||||||||||||| ||||||| | ||||| | ||||||||| || || | |
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| T |
10201695 |
tcttcatacagacttagaaaagaagaaactgtccttttttgttggaccaaaatctttgtgtcttcagtgaaggtatctagggcattattaatgtccacca |
10201596 |
T |
|
| Q |
136 |
cgtcattgccaccataa---tcatcatcgtcactaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattag |
232 |
Q |
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| ||||| |||||| | || ||||| || || | || ||||||| |||||||| | || || || || ||||| |||||||||||||| |||| |
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| T |
10201595 |
catcatttccaccaaaggcttcgtcatcatcgctgatatcgccattttctttttcatggtataacaagtttgacttgattttcttcacaagctctattaa |
10201496 |
T |
|
| Q |
233 |
gtgcattaaataagtggttgaaggtgatgttttagatacatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagcc |
332 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||||| |
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| T |
10201495 |
gtgcattaaataagtggtggaaggtgatgttttagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagcc |
10201396 |
T |
|
| Q |
333 |
aaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattc |
432 |
Q |
| |
|
|||||| ||| || |||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |||| |
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| T |
10201395 |
aaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctataaacgacacaattattc |
10201296 |
T |
|
| Q |
433 |
ctgatattattgtgttaagtactattgctactagca |
468 |
Q |
| |
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|||||||||||||||| | |||||| | |||||||| |
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|
| T |
10201295 |
ctgatattattgtgtttaatactatcgatactagca |
10201260 |
T |
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