View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_34 (Length: 205)
Name: NF12174_high_34
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 24591361 - 24591547
Alignment:
| Q |
1 |
aggatttacaacttcaataacaccttgtataaatcttgttgaattagctccaatatgtatcatatgaagcacgagtatatcagaatatcctaagagggac |
100 |
Q |
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| T |
24591361 |
aggatttacaacttcaataacaccttgtataaatcttgttgaattagctccaatatgtatcatatgaagcacaagtatatcagaatctcctaagagggac |
24591460 |
T |
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| Q |
101 |
taacatgaagaggcagagagagtaatgcagccaaggatgacttgccgacaacattggcgaatgttcatgtgatttctgcctcgttgt |
187 |
Q |
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| T |
24591461 |
ttacatgaagaggcagagagagtaatgcagccaaggatgacttgccgacaacattggcgaatgttcatgtgatttctgcctcattgt |
24591547 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 34472287 - 34472345
Alignment:
| Q |
89 |
cctaagagggactaacatgaagaggcagagagagtaatgcagccaaggatgacttgccg |
147 |
Q |
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| T |
34472287 |
cctaagaggagcttacatgaagaggcagagagtgtagtacagccaaggatgacttgccg |
34472345 |
T |
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