View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_5 (Length: 553)
Name: NF12174_high_5
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 34832915 - 34832641
Alignment:
| Q |
6 |
gagcagaacctgtgatatttgttgtagggtggtgtggaagaaataaagagctttgtttttatgttgatagaattggaaaatcccaattaaagagatcatg |
105 |
Q |
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|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832915 |
gagctgaatctgtgatatttgttatagggtggtgtggaagaaataaagagctttgtttttatgttgatagaattggaaaatcccaattaaagagatcatg |
34832816 |
T |
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| Q |
106 |
acatggtgcaatgactcagatgatcaagataggggcattgaactaataacatctactgttattcctggaactagcaatgaaagtactcttgttacagatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832815 |
acatggtgcaatgactcagatgatcaagataggggcattgaactaataacatctactgttattcctggaactagcaatgaaagtactcttgttacagatg |
34832716 |
T |
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| Q |
206 |
atgaaacaaaaccaaccgaagttcgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832715 |
atgaaacaaaaccaaccgaagttcgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg |
34832641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 351 - 534
Target Start/End: Complemental strand, 34832570 - 34832376
Alignment:
| Q |
351 |
gcagaaatcgaactcagtactttctggactttcaacactcacacacatgacgcaccac-----------caatctttatttagttttttaactttattat |
439 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
34832570 |
gcagaaatcgaacacagtactttctggactttcaacactcacacacatgacgcaccactgacgcaccaccaatctttatttagctttttaactttattat |
34832471 |
T |
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| Q |
440 |
tgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttc |
534 |
Q |
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| T |
34832470 |
tgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttc |
34832376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 28951608 - 28951334
Alignment:
| Q |
6 |
gagcagaacctgtgatatttgttgtagggtggtgtggaagaaataaagagctttgtttttatgttgatagaattggaaaatcccaattaaagagatcatg |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28951608 |
gagctgaatctgtgatatttgttgtagggtggtgtggaagaaataaagagctttgtttttatgttgatagaattggaaaatcccaattaaagggatcatg |
28951509 |
T |
|
| Q |
106 |
acatggtgcaatgactcagatgatcaagataggggcattgaactaataacatctactgttattcctggaactagcaatgaaagtactcttgttacagatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28951508 |
acatggtgcaatgactcagatgatcaagataggggcattgaactaataacatctactgttattcctggaactagcaatgaaagtcctcttgttacagatg |
28951409 |
T |
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| Q |
206 |
atgaaacaaaaccaaccgaagttcgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg |
280 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951408 |
atgaaacaaaaccaaccgaagttcgaactctaacttgcccctcatgtggccataacattgaatttcaagatcagg |
28951334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 351 - 534
Target Start/End: Complemental strand, 28951263 - 28951068
Alignment:
| Q |
351 |
gcagaaatcgaactcagtactttctggactttcaacactcacacacatgacgcacca------------ccaatctttatttagttttttaactttatta |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
28951263 |
gcagaaatcgaactcagtactttctggactttcaacactcacacacatgacgcaccaatcactaatgctccaatctttatttagttttttaactttataa |
28951164 |
T |
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| Q |
439 |
ttgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttc |
534 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951163 |
ttggttgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttc |
28951068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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