View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_high_6 (Length: 536)
Name: NF12174_high_6
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 42325281 - 42324876
Alignment:
| Q |
1 |
catatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaatctctcacaacatcaaacatccctctctctaacaaactaac |
100 |
Q |
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| T |
42325281 |
catatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaatctctcacaacatcaaacatccatctctctaacaaactaac |
42325182 |
T |
|
| Q |
101 |
aactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaatatatacatatttggttggtgtaggtgatgacagaccctgatg |
200 |
Q |
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| T |
42325181 |
aactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaatatatacatatttggttggtgtaggtgatgacagaccctgatg |
42325082 |
T |
|
| Q |
201 |
ttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccatatatctagaaattaaccagttatt |
300 |
Q |
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| T |
42325081 |
ttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccatatatctagaaattaaccagttatt |
42324982 |
T |
|
| Q |
301 |
ttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacatttggtaggtattttaatggttgaaa |
400 |
Q |
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| T |
42324981 |
ttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacatttggtaggtattttaatggttgaaa |
42324882 |
T |
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| Q |
401 |
aatgcc |
406 |
Q |
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|||||| |
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| T |
42324881 |
aatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 424 - 523
Target Start/End: Complemental strand, 42324848 - 42324749
Alignment:
| Q |
424 |
gatgagagagaatataatgacatattgaaattgtaaaacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
523 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
197 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
246 |
Q |
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|||||||||||||| |||||||||||| | | ||||||||| |||||||| |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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