View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12174_high_8 (Length: 447)
Name: NF12174_high_8
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 436
Target Start/End: Original strand, 12119584 - 12119982
Alignment:
| Q |
29 |
ttgaggggtcgtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
12119584 |
ttgaggggtcgtgaaccatccaaaaaatgatcgttccacaccttgaacatgtttgtgaactatcatcaaaactacattttaatgttatgcttataaaaca |
12119683 |
T |
|
| Q |
129 |
tttcaactcagttgtagcctcgtgtataggggactttgacaaaatagaaaaacattacaatccttattggaacaacaccaaccggagtgcgaacaatcct |
228 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12119684 |
tttcaactcagttgtagcctcgtgtatgggggagtttgacaaaatagaaacacattaccatccttattggaacaacaccaaccggagtgcgaacaatctt |
12119783 |
T |
|
| Q |
229 |
acttcttccatgtacatgttatatgtactttgcactttatctttttctctgcgagtcatgtctttccctttctttttgcaggaaaaatgtcaagtctcgc |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12119784 |
acttcttccatgtacatgttatatgtactttgcactttatctttttctctgcgggtcatgtctttccctttctttttgcagaaaaaatgtcaagtctcgc |
12119883 |
T |
|
| Q |
329 |
cttcagtaagtccaagaaggcacatgcccgtctagttccagagcacttgtgtgattctcttcatcgattttgaccactccttttagcaaggtgggaaaac |
428 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||| | | |||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
12119884 |
cttaagtaagtccaagaaggcacatgcccgtctggttccagag---------taatatcttcaccgattctgaccactccttttagcaaggtgagaaaac |
12119974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 25830375 - 25830289
Alignment:
| Q |
39 |
gtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
125 |
Q |
| |
|
|||||||| | ||| ||| || |||||||| ||| ||||| |||||||||||||| |||| ||||||||||||| ||| ||||||| |
|
|
| T |
25830375 |
gtgaaccagcaaaagaagtattgttccacacccttaacatatttgtgaactatcaccaaacgtacattttaatgttatgtttataaa |
25830289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 19606991 - 19607058
Alignment:
| Q |
58 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
125 |
Q |
| |
|
||||||||| | ||||||||||| | |||||||||||||| ||||||||||||| |||| |||||| |
|
|
| T |
19606991 |
atcgttccataccctgaacatgtctcagaactatcatcaaatgtacattttaatgttatgcatataaa |
19607058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 45841686 - 45841780
Alignment:
| Q |
58 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttcaactcagttgtagcctcgtg |
152 |
Q |
| |
|
||||||||||| ||| | ||| | ||| | ||||||||||| ||||||||||| | ||||||||||| || |||| || |||| |||||||||| |
|
|
| T |
45841686 |
atcgttccacaccctcaccatatctgtaatctatcatcaaatgtacattttaattttatgcttataaagcacttcacctaagttttagcctcgtg |
45841780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 55229059 - 55228985
Alignment:
| Q |
59 |
tcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttca |
133 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| |||| | ||||||||||| |||||| ||||||| |||| |
|
|
| T |
55229059 |
tcgttccacacgcttaacatatttgtgaactatcaccaaacgtgcattttaatgttatgcttgtaaaacacttca |
55228985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University