View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_1 (Length: 912)

Name: NF12174_low_1
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_1
NF12174_low_1
[»] chr6 (28 HSPs)
chr6 (15-532)||(31564316-31564843)
chr6 (591-877)||(31564838-31565117)
chr6 (680-900)||(33414568-33414788)
chr6 (311-677)||(33385314-33385670)
chr6 (311-677)||(33259583-33259959)
chr6 (680-900)||(33258194-33258416)
chr6 (705-900)||(33269541-33269740)
chr6 (110-274)||(33416366-33416536)
chr6 (485-677)||(33416152-33416345)
chr6 (680-900)||(33395052-33395274)
chr6 (678-850)||(33278972-33279139)
chr6 (492-677)||(24631975-24632161)
chr6 (680-784)||(33293090-33293194)
chr6 (773-889)||(33384040-33384156)
chr6 (451-633)||(9165228-9165418)
chr6 (24-153)||(33385707-33385837)
chr6 (723-847)||(33280358-33280482)
chr6 (334-440)||(24631864-24631970)
chr6 (448-522)||(29274300-29274376)
chr6 (39-98)||(33281320-33281376)
chr6 (843-887)||(33293034-33293078)
chr6 (680-726)||(28873045-28873091)
chr6 (27-81)||(33416538-33416592)
chr6 (39-98)||(33301947-33302003)
chr6 (342-417)||(281808-281881)
chr6 (591-632)||(33282241-33282282)
chr6 (591-632)||(33398042-33398083)
chr6 (591-632)||(33408952-33408993)
[»] chr2 (7 HSPs)
chr2 (680-900)||(17447760-17447981)
chr2 (27-156)||(17443374-17443503)
chr2 (311-376)||(17443537-17443602)
chr2 (448-529)||(34339039-34339122)
chr2 (481-521)||(3102617-3102657)
chr2 (339-416)||(14299588-14299663)
chr2 (448-509)||(7103554-7103615)
[»] scaffold0428 (7 HSPs)
scaffold0428 (680-900)||(2315-2537)
scaffold0428 (311-547)||(3802-4047)
scaffold0428 (678-850)||(15114-15281)
scaffold0428 (723-847)||(13771-13895)
scaffold0428 (591-677)||(3704-3791)
scaffold0428 (39-98)||(12876-12932)
scaffold0428 (591-632)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (119-273)||(30653203-30653360)
chr5 (400-522)||(11684346-11684468)
chr5 (381-446)||(30653373-30653438)
chr5 (448-529)||(32059660-32059742)
chr5 (485-529)||(10391269-10391313)
chr5 (341-392)||(11457158-11457209)
chr5 (490-529)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (339-417)||(13000381-13000457)
chr8 (456-524)||(26717178-26717246)
chr8 (434-520)||(5290566-5290649)
chr8 (466-529)||(26716527-26716590)
chr8 (339-417)||(30191098-30191174)
chr8 (396-482)||(10079082-10079168)
chr8 (396-445)||(30389108-30389157)
chr8 (448-522)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (341-417)||(43115093-43115167)
chr3 (451-529)||(38462197-38462277)
chr3 (449-522)||(22232749-22232824)
chr3 (456-538)||(3015928-3016011)
chr3 (339-417)||(37273171-37273247)
chr3 (318-414)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (341-454)||(3468614-3468725)
chr7 (448-529)||(3610811-3610894)
chr7 (400-521)||(26935573-26935696)
chr7 (485-563)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (466-519)||(44207697-44207750)
chr1 (339-390)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (434-507)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (466-520)||(32920489-32920543)
chr4 (456-523)||(47970240-47970309)
chr4 (436-506)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Original strand, 31564316 - 31564843
Alignment:
Q  15 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564316 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 31564415  T
Q  115 gacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564416 gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 31564515  T
Q  211 gaatttatacatgtatttcaatttttacatgt------aaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg 304  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31564516 gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg 31564615  T
Q  305 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttt 404  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31564616 tggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttt 31564715  T
Q  405 tcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 504  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31564716 tcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacat 31564815  T
Q  505 aagcaattttatgataagtgtttatctt 532  Q
    | ||||||||||||||||||||||||||    
T  31564816 atgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 591 - 877
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 690  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  691 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  791 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 877  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 680 - 900
Target Start/End: Complemental strand, 33414788 - 33414568
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 779  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  780 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 879  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  880 ttgctgcttgtccacaggttc 900  Q
    |||||||||||||||||||||    
T  33414588 ttgctgcttgtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 311 - 677
Target Start/End: Complemental strand, 33385670 - 33385314
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 508  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  509 aattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttaca 608  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| |||| ||||||||||||||||||||||||||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttccagcctgttcacctatctttgaattcttaca 33385384  T
Q  609 taaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 677  Q
    |||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385383 taagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 311 - 677
Target Start/End: Complemental strand, 33259959 - 33259583
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 501  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  502 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 601  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T
Q  602 tcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 677  Q
    ||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259659 tcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 680 - 900
Target Start/End: Complemental strand, 33258416 - 33258194
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 778  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  779 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 878  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  879 gttgctgctt-gtccacaggttc 900  Q
    || |||  || ||||||||||||    
T  33258216 gtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 705 - 900
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  705 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 800  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  801 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 900  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  110 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 205  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  206 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 485 - 677
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 584  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  585 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 677  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 680 - 900
Target Start/End: Complemental strand, 33395274 - 33395052
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 779  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  780 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 877  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  878 agttgctgcttgtccacaggttc 900  Q
    |   |||||||||||||||||||    
T  33395074 ataggctgcttgtccacaggttc 33395052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 678 - 850
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  678 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 777  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  778 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 850  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 492 - 677
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  492 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 591  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  592 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 677  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 680 - 784
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 779  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  780 gattc 784  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 773 - 889
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  773 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 872  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  873 atgcaagttgctgcttg 889  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 451 - 633
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  451 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 548  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  549 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 633  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  24 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 122  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  123 ctcgagtaatggtttcaatttcatcttattt 153  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 723 - 847
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  723 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 822  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  823 actttatcggtagaagtgagaaatt 847  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  334 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 433  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  434 agcttat 440  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 522  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 843 - 887
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  843 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 887  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 680 - 726
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 726  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  27 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 81  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  342 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtc 632  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtc 632  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtc 632  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 1e-59; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 680 - 900
Target Start/End: Original strand, 17447760 - 17447981
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 778  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  779 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 878  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  879 gttgctgcttgtccacaggttc 900  Q
    || ||||||| |||||||||||    
T  17447960 gtggctgcttttccacaggttc 17447981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  27 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 126  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  127 agtaatggtttcaatttcatcttatttgct 156  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 376  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  481 ttgctataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 416  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 509  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 5e-46; HSPs: 7)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 680 - 900
Target Start/End: Complemental strand, 2537 - 2315
Alignment:
Q  680 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 778  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  779 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 878  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  879 gttgctgctt-gtccacaggttc 900  Q
    || |||  || ||||||||||||    
T  2337 gtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 311 - 547
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 501  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  502 cataagcaattttatgataagtgtttatcttgtaagctttaattag 547  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 678 - 850
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  678 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 777  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  778 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 850  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 723 - 847
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  723 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 822  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  823 actttatcggtagaagtgagaaatt 847  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 677
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 677  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  591 tatctttgaattcttacataaggtttgtaatttttaaatgtc 632  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 5e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  119 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 214  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  215 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 273  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  400 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 499  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  500 tacataagcaattttatgataag 522  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  381 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 446  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 392  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 529
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  490 aaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  456 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 524  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 520
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  434 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 520  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  396 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 482  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  396 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 445  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 522  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  451 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  449 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 522  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 538
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  456 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 538  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  318 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 414  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 440  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  441 gaaaatcgcttata 454  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 521
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  400 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 497  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  498 tatacataagcaattttatgataa 521  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 563  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 519  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 390  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  434 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 507  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 520  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  456 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 523  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  436 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 506  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

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