View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_10 (Length: 447)
Name: NF12174_low_10
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 436
Target Start/End: Original strand, 12119584 - 12119982
Alignment:
| Q |
29 |
ttgaggggtcgtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaaca |
128 |
Q |
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| T |
12119584 |
ttgaggggtcgtgaaccatccaaaaaatgatcgttccacaccttgaacatgtttgtgaactatcatcaaaactacattttaatgttatgcttataaaaca |
12119683 |
T |
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| Q |
129 |
tttcaactcagttgtagcctcgtgtataggggactttgacaaaatagaaaaacattacaatccttattggaacaacaccaaccggagtgcgaacaatcct |
228 |
Q |
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| T |
12119684 |
tttcaactcagttgtagcctcgtgtatgggggagtttgacaaaatagaaacacattaccatccttattggaacaacaccaaccggagtgcgaacaatctt |
12119783 |
T |
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| Q |
229 |
acttcttccatgtacatgttatatgtactttgcactttatctttttctctgcgagtcatgtctttccctttctttttgcaggaaaaatgtcaagtctcgc |
328 |
Q |
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| T |
12119784 |
acttcttccatgtacatgttatatgtactttgcactttatctttttctctgcgggtcatgtctttccctttctttttgcagaaaaaatgtcaagtctcgc |
12119883 |
T |
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| Q |
329 |
cttcagtaagtccaagaaggcacatgcccgtctagttccagagcacttgtgtgattctcttcatcgattttgaccactccttttagcaaggtgggaaaac |
428 |
Q |
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| T |
12119884 |
cttaagtaagtccaagaaggcacatgcccgtctggttccagag---------taatatcttcaccgattctgaccactccttttagcaaggtgagaaaac |
12119974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 25830375 - 25830289
Alignment:
| Q |
39 |
gtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
125 |
Q |
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| T |
25830375 |
gtgaaccagcaaaagaagtattgttccacacccttaacatatttgtgaactatcaccaaacgtacattttaatgttatgtttataaa |
25830289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 19606991 - 19607058
Alignment:
| Q |
58 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
125 |
Q |
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| T |
19606991 |
atcgttccataccctgaacatgtctcagaactatcatcaaatgtacattttaatgttatgcatataaa |
19607058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 45841686 - 45841780
Alignment:
| Q |
58 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttcaactcagttgtagcctcgtg |
152 |
Q |
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| T |
45841686 |
atcgttccacaccctcaccatatctgtaatctatcatcaaatgtacattttaattttatgcttataaagcacttcacctaagttttagcctcgtg |
45841780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 55229059 - 55228985
Alignment:
| Q |
59 |
tcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttca |
133 |
Q |
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| T |
55229059 |
tcgttccacacgcttaacatatttgtgaactatcaccaaacgtgcattttaatgttatgcttgtaaaacacttca |
55228985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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