View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_11 (Length: 413)
Name: NF12174_low_11
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 182 - 388
Target Start/End: Complemental strand, 30374183 - 30373977
Alignment:
| Q |
182 |
ccagagtctcaattctattcctttcatcttctcttgaaggtcagtgatcagatgttagtgcctcatcaacccctcctctactaataacaacacgacaatc |
281 |
Q |
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| T |
30374183 |
ccagggtctcaattctgtccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatc |
30374084 |
T |
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| Q |
282 |
atcggcgttaaacacaactaagttaccattcctaatcaatgttgttacacaacaagaaccaccaaggagatcttttttcatgaaatcaaaatcaatattg |
381 |
Q |
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| T |
30374083 |
accagcattagacacaactaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattg |
30373984 |
T |
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| Q |
382 |
aggtaac |
388 |
Q |
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||||||| |
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| T |
30373983 |
aggtaac |
30373977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30374347 - 30374291
Alignment:
| Q |
124 |
gatacaactagagatccttgaattctccaaacaccgcgacataaatcaacataacca |
180 |
Q |
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| T |
30374347 |
gatacagcaagagatccttgaatcctccaaacaccgcgacataaatcaacataacca |
30374291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 26017633 - 26017502
Alignment:
| Q |
214 |
cttgaaggtcagtgatcagatgttagtgcctcatcaacccctcctctactaataacaacacgacaatcatcggcgttaaacacaactaagttaccattcc |
313 |
Q |
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| T |
26017633 |
cttgaaggtttgtgatccgacgttaaggcctcagcaacacctcctctactgatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcc |
26017534 |
T |
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| Q |
314 |
taatcaatgttgttacacaacaagaaccacca |
345 |
Q |
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|||| |||| ||||||||| ||||| |||||| |
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| T |
26017533 |
taataaatgctgttacacagcaagagccacca |
26017502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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