View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_13 (Length: 411)
Name: NF12174_low_13
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 42307115 - 42306732
Alignment:
| Q |
19 |
aatgagcgttttgaaaccattgatggtattttgttttacgttattataatgatacttggtaattataggcaaaggcagtatcatcataattaaagttctt |
118 |
Q |
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| T |
42307115 |
aatgagcgttttgaaaccattgatggtattttgttttacgttattataatgatacttggtaattataggcaaaggcagtatcatcataattaaagttctt |
42307016 |
T |
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| Q |
119 |
attttcttgccaaattcaggatataagcatgannnnnnnncgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgaatg |
218 |
Q |
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| T |
42307015 |
attttcttgccaaattcaggatataagcatgattttttttcgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgagtg |
42306916 |
T |
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| Q |
219 |
gcataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaatgtcaattagctggtcatggggttacctttgg |
318 |
Q |
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| T |
42306915 |
gcataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaatgtcaattagctggtcatggggttacctttgg |
42306816 |
T |
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| Q |
319 |
tgtagcttgttc--ttctctttctattatgtatgtccatgactttgcttgtatcaacctttgataccttagctataggattcat |
400 |
Q |
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| T |
42306815 |
tgtagcttgttcatttctctttctattatgtatgtccatgactttgcttgtatcaatctttgataccttagctttaggattcat |
42306732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 120 - 317
Target Start/End: Complemental strand, 16935946 - 16935751
Alignment:
| Q |
120 |
ttttcttgccaaattcaggatataagcatgannnnnnnncgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgaatgg |
219 |
Q |
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| T |
16935946 |
ttttcttgccaaattcaggatataagcatgattttt---cttcttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgagtgg |
16935850 |
T |
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| Q |
220 |
cataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaa-tgtcaattagctggtcatggggttacctttg |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
16935849 |
cataacgtgaacatcatggttgacacatggaattttggatgtgcctaatttccttatgggactgaaattgtcaattagctggtcatggggttacatttg |
16935751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 16935754 - 16935713
Alignment:
| Q |
359 |
tttgcttgtatcaacctttgataccttagctataggattcat |
400 |
Q |
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| T |
16935754 |
tttgcttgtatcaatctttgataccttagctttaggattcat |
16935713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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