View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_15 (Length: 385)
Name: NF12174_low_15
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 187 - 371
Target Start/End: Original strand, 48756161 - 48756349
Alignment:
| Q |
187 |
caaatcaacaatatgcttggactgaatcgaca---tgaaa-ctctacatgatttgctttaaattctctatttgttcctattaaattagacgaacgtgcat |
282 |
Q |
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| T |
48756161 |
caaatcaacaatatgcttggactgaatcgacaacatgaaaactctacatgatttgctttaaattctctatttgtttctattaaattagacgaacgtgcat |
48756260 |
T |
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| Q |
283 |
ccaaaaattgctgcaaaagaggcacagatttaacataacacttccttgaattatttcatgaaagctctagtatgcaaagaaatcctttt |
371 |
Q |
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| T |
48756261 |
ccaaaaattgctgcaaaagaggcacagatttaacataacacttccttgaattatttcatgaaagctctagtatgcaaagaaatcctttt |
48756349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 48755989 - 48756119
Alignment:
| Q |
1 |
ctcggaccgttcatggtttggttcatacagacaactgaaccgaaccgatttgttaatagtttggtccgaattgaataggactggtgttatagttcggtga |
100 |
Q |
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| T |
48755989 |
ctcggaccgttcatggtttggttcatacagacaactgaaccaaaccaatttgttaatagtttggtccgaattgaatcggactggtgttatagttcggtga |
48756088 |
T |
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| Q |
101 |
actggttcttaattttcaaactgaactgaaa |
131 |
Q |
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| T |
48756089 |
actggttcttaattttcaaactgaactgaaa |
48756119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 26546614 - 26546571
Alignment:
| Q |
324 |
ttccttgaattatttcatgaaagctctagtatgcaaagaaatcc |
367 |
Q |
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| T |
26546614 |
ttccttgaattatttcatgaaaactctagtatgcaaggaaatcc |
26546571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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