View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_17 (Length: 338)
Name: NF12174_low_17
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 45344250 - 45343928
Alignment:
| Q |
1 |
ccaccattcaccaaccactgtcaagatttaatgtttttctaactgcatctctaactggaagaataaaccatggcatttgtaagactctctaaagaatgta |
100 |
Q |
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| T |
45344250 |
ccaccactcaccaaccactgtcaagatttaatgtttttcgaactgcatctctaactggaagaataaaccatgacatttgtaagactctctaaagaatgta |
45344151 |
T |
|
| Q |
101 |
gcaccacgtcactacctgctaatatcaaggtagtagatacgcttgaccacgttactgtaatatgttgccttatcggcacagaatttgatagcttcagtat |
200 |
Q |
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| T |
45344150 |
gcaccacgtcactacctgctaatatcaaggtagtagatacgtttgaccacgttactgtaatatgttgccttatcggcgcagaatttgatagcttcagtat |
45344051 |
T |
|
| Q |
201 |
aaactccaatgcctttcctttcctccattgcttatctatgtaggcttaatttccctgaatagttaatactgtttgactatatagtgaagcctcaaatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45344050 |
aaactccaatgcctttcctttcctccattgcttatctatgtaggcttaatttccctgaatagttaatactgtttgactagatagtgaagcctcaaatgaa |
45343951 |
T |
|
| Q |
301 |
aagacaatcaatatctaccacag |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45343950 |
aagacaatcaatatctaccacag |
45343928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 45332458 - 45332375
Alignment:
| Q |
135 |
agatacgcttgaccac-gttactgtaatatgttgccttatcggcacagaatttgatagcttcagtataaactccaatgcctttc |
217 |
Q |
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|||||||||||| | | ||||||||| |||||||| |||| | | |||| ||| |||||||||||||||| ||||||| ||||| |
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| T |
45332458 |
agatacgcttgagccctgttactgtagtatgttgcgttattgccgcagagtttaatagcttcagtataaaatccaatggctttc |
45332375 |
T |
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