View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_18 (Length: 335)
Name: NF12174_low_18
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 22395469 - 22395774
Alignment:
| Q |
14 |
ctgtgaaacttttgatcaggacttcttccgcgtcactcaattcaccaagcctattgtctgcttgatacattgaatggaattgtttctttagaactttttg |
113 |
Q |
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| T |
22395469 |
ctgtgaaacttttgatcaggacttcttccgcgtcactcaattcatcaagcctattgtctgcttgatacattgaatggaattgttcctttagaactttttg |
22395568 |
T |
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| Q |
114 |
tttgtttcataattgaaaagaaattaagagaatgtgaaatctttgttcaggatgtacctaggaaaacaaatgtcgtagaagtgaagagaaacggtggagc |
213 |
Q |
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| T |
22395569 |
tctgtttcataattgaaaagaaattaagagaatgtgaaatgtttgttcaggatgtacctaggaaaacaaatgtcgtagaagtgaagagaaatggtggagc |
22395668 |
T |
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| Q |
214 |
atttcaaccattccacaaagaggaaatcgctgctgaaaaagataatgcattagaaagtgataaagcaccaaccagttcgcctcaagtaccagctacaagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22395669 |
atttcaaccattccacaaagaggaaatcgctgctgaaaaagataatgcattagaaagtgataaagcaccaaccagttcgcctcaagtaccagctacaagt |
22395768 |
T |
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| Q |
314 |
tctacc |
319 |
Q |
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|||||| |
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| T |
22395769 |
tctacc |
22395774 |
T |
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